PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016461107.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 405aa MW: 44716.7 Da PI: 8.993

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016461107.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.8	8.2e-05	162	184	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 Cp Cg+ F+ ++L++H+ + H XP_016461107.1 162 ACPECGEIFPKIESLEHHQAVrH 184 6******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.829	161	189	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	161	184	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.90.228.10	3.5E-12	186	401	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain
SuperFamily	SSF56399	1.92E-24	186	401	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence Send to blast
MALFTFLPEA SETQKQPSKR RKKQQKQKQP SSWDQFKNLL SCKQIENSTV DDPSKNAYYS 60 KLGSCSSICS FKDVVLHHGN NTRVVHRVDD NNNSLEDQSS SSLGQETRLL SKKTSHGSTS 120 SRSFGSSTSS KGMQFRKLSR CYECHMIVDP SRHPLPRSTI CACPECGEIF PKIESLEHHQ 180 AVRHAVSELS PEDSSRNIVE IIFKSSWLKK DNPICKIERI LKVHNTKRII HKFEDYRDAV 240 KLRATVNGKK NPRCAADGNE LLRFYCTTLT CSLGAKGTSN LCSSVCTPGC GVCTIIRHGF 300 QGNNNKVCGV RTTASSGRAH DCLGSGADGR RAMLVCRVIA GRVKRVAEDT AATEESGGSG 360 LSAAANLYDS VVGYSDVYSN LEELYVFNPR AILPCFVVIY KALES

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence Send to blast

MALFTFLPEA SETQKQPSKR RKKQQKQKQP SSWDQFKNLL SCKQIENSTV DDPSKNAYYS  60
KLGSCSSICS FKDVVLHHGN NTRVVHRVDD NNNSLEDQSS SSLGQETRLL SKKTSHGSTS  120
SRSFGSSTSS KGMQFRKLSR CYECHMIVDP SRHPLPRSTI CACPECGEIF PKIESLEHHQ  180
AVRHAVSELS PEDSSRNIVE IIFKSSWLKK DNPICKIERI LKVHNTKRII HKFEDYRDAV  240
KLRATVNGKK NPRCAADGNE LLRFYCTTLT CSLGAKGTSN LCSSVCTPGC GVCTIIRHGF  300
QGNNNKVCGV RTTASSGRAH DCLGSGADGR RAMLVCRVIA GRVKRVAEDT AATEESGGSG  360
LSAAANLYDS VVGYSDVYSN LEELYVFNPR AILPCFVVIY KALES

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ809740	1e-33	FJ809740.1 Solanum pennellii chromosome 4 clone C04SpBP093E005.P4C04, complete sequence.
GenBank	HG975443	1e-33	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016461107.1	0.0	PREDICTED: uncharacterized protein LOC107784482
TrEMBL	A0A1S3ZA61	0.0	A0A1S3ZA61_TOBAC; uncharacterized protein LOC107784482
STRING	XP_009628578.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5195	23	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	1e-147	C2H2-like zinc finger protein