 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_016460979.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
AP2 |
| Protein Properties |
Length: 466aa MW: 51502.9 Da PI: 7.7151 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016460979.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 53.3 | 7e-17 | 144 | 193 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g
XP_016460979.1 144 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHTAARAYDRAAIKFRG 193
78*******************......55************************997 PP
|
| 2 | AP2 | 39.8 | 1.1e-12 | 236 | 286 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
s+++GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+ k +g
XP_016460979.1 236 SKFRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAIKTNG 286
79********.7******5553..2.26**********99**********98766 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 466 aa
Download sequence Send
to blast |
MLDLNVNVIY DENYIVDEKL PEGSVADHES GTSNSSSLRN AEATSSAGGD DDTCSTRADN 60
LFAFNFDILK FGGVDATSRS NAFVTRQLFP VHDGELNRPG QTDRVNFSSG RSGFGDERTV 120
LQQQPQQEKP QVKKSRRGPR SRSSQYRGVT FYRRTGRWES HIWDCGKQVY LGGFDTAHTA 180
ARAYDRAAIK FRGVDADINF SISDYEEDMK QMKDLGKEEF VHLLRRHSNG FSRGSSKFRG 240
VTLHKCGRWE ARMGQFLGKK YIYLGLFDSE VEAARAYDKA AIKTNGREAV TNFEPSAYQG 300
ETISEPQKEG SQPDLDLNLG MSTSSSKEND KLGGSYYHPY DMQDATKSKM DKPGPVIVGS 360
SHLKGLPMTS KQAHLWSGAY SNFSPTYEGR ASDKRKDTGS SLGPSNWAMQ MPTQVDTAPV 420
SMFYTAASSG FLTPASAFIT SSASPVAPST NASQYYYQFS PHVPPP
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | HQ586954 | 0.0 | HQ586954.1 Solanum lycopersicum AP2 transcription factor SlAP2e mRNA, complete cds. |
