PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016460627.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 303aa    MW: 33628.6 Da    PI: 10.1429
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016460627.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85e-08204253147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_016460627.1 204 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 253
                      678999********************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542364.92E-911100IPR029071Ubiquitin-related domain
PROSITE profilePS5129415.876199258IPR017930Myb domain
SMARTSM007172.0E-7203256IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-11204254IPR009057Homeodomain-like
SuperFamilySSF466893.04E-16205286IPR009057Homeodomain-like
CDDcd116601.37E-18205255No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
VFNGGRASFK PSDSCVKFRI KSFRVPDLFV EIPENATVGS LKRTVMEAVT AILGGGLRIG  60
VVFQGKKVRD DNKTLLQTGI SHDYKLDALG FSLEPNPIQA SPPLGPDCRS CVLPCDTPQP  120
LTRCLSPAIT GIQQGRSDDH TGTCLNNFVE SDRDSAPSPH YTALEKISAN SRALIPVTAV  180
NAEALAVVPL RKPKRSEATQ RRIRRPFSVA EVEALVQAVE KLGTGRWRDV KLRAFDNAKH  240
RTYVDLKDKW KTLVHTARIS PQQRRGEPVP QELLDRVLTA HAYWSQQQAK QQMKQPSETY  300
LLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A6e-591912944107Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755187e-87HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009764838.10.0PREDICTED: telomere repeat-binding protein 5 isoform X1
RefseqXP_009764839.10.0PREDICTED: telomere repeat-binding protein 5 isoform X1
RefseqXP_016460627.10.0PREDICTED: telomere repeat-binding protein 5-like, partial
SwissprotQ6R0E31e-124TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLA0A1S3Z8U90.0A0A1S3Z8U9_TOBAC; telomere repeat-binding protein 5-like
TrEMBLA0A1U7VEQ50.0A0A1U7VEQ5_NICSY; telomere repeat-binding protein 5 isoform X1
STRINGXP_009764838.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30762348
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-112TRF-like 2