PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016460320.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

YABBY

Protein Properties

Length: 147aa MW: 16403.9 Da PI: 7.679

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016460320.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	93.6	5e-29	9	90	5	87
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnve 87 sse+vCyv+CnfCnt+lavsvP +s++++vtvrCGhC++llsvn+ q l+ ++ l+++ + + k +++ ++n++ XP_016460320.1 9 PSSERVCYVHCNFCNTMLAVSVPCNSMMTIVTVRCGHCANLLSVNIGSLLQSLPLQD-LQRQQSSIIEDASKACGSSSSTNYH 90 689***************************************************999.7888887777777766666555544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.4E-30	10	105	IPR006780	YABBY protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 147 aa Download sequence Send to blast
MSLDITYSPS SERVCYVHCN FCNTMLAVSV PCNSMMTIVT VRCGHCANLL SVNIGSLLQS 60 LPLQDLQRQQ SSIIEDASKA CGSSSSTNYH RFSAIATTPE DDQPRTMPIR RKLSFSLSIS 120 FDLMLYIYFL CLPCRANVTH QHIYLPA

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ667765	1e-62	KJ667765.1 Solanum melongena YAB2 protein mRNA, partial cds.
GenBank	KJ667768	1e-62	KJ667768.1 Solanum aethiopicum YAB2 protein mRNA, partial cds.
GenBank	KJ667770	1e-62	KJ667770.1 Solanum torvum YAB2 protein mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016460320.1	1e-105	PREDICTED: protein YABBY 2-like isoform X4
Swissprot	Q10FZ7	2e-23	YAB2_ORYSJ; Protein YABBY 2
TrEMBL	A0A1S3Z770	1e-103	A0A1S3Z770_TOBAC; protein YABBY 2-like isoform X4
STRING	XP_009792033.1	3e-66	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	7e-21	YABBY family protein