PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016460070.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 168aa MW: 18783.5 Da PI: 9.72

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016460070.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.7	9.1e-05	40	62	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C k Fs++ L H++ H XP_016460070.1 40 YECHFCLKKFSNSRALGGHQNAH 62 99******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.1E-4	37	66	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.15E-6	37	67	No hit	No description
PROSITE profile	PS50157	11.177	40	67	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	42	62	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MDERPKEKTS ICMNSSGIVL PNPNENLRNL SVSAVMELKY ECHFCLKKFS NSRALGGHQN 60 AHRRERLKKK RMDLEAKRAS SSMFYLNALI RNNGVMYPYS YVPTIVYGSS LISFSSVYHC 120 QNGTHSPCFT VASSSGELYL QNSSFIAIQG GESRGRYPLS LVIVPSTS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016460070.1	1e-122	PREDICTED: zinc finger protein JAGGED-like
TrEMBL	A0A1S3Z6G2	1e-120	A0A1S3Z6G2_TOBAC; zinc finger protein JAGGED-like
STRING	XP_009588286.1	1e-120	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6194	6	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G27880.1	1e-11	C2H2 family protein