PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016459805.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 298aa    MW: 35130.7 Da    PI: 8.1157
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016459805.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix78.31.1e-2448130186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W+ qe+++ + +r e+++++ ++k++k lWe ++ km+++g++rsp+qCk+kw+nl +ryk +++ e +     ++++p++++l+
  XP_016459805.1  48 QWSIQETRDFLMIRAELDQTFMETKRNKLLWEVIATKMKDKGYNRSPEQCKCKWKNLVTRYKGCETLEPEA--L-RQQFPFYNELQ 130
                     7********************************************************************95..3.4589*****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd122031.34E-2447112No hitNo description
PfamPF138375.0E-2048132No hitNo description
PROSITE profilePS500907.44549105IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MDPHLHHHHH QHHQQQQQQN PFSLQSVNVD TSGGGVNIGT TSGDRFPQWS IQETRDFLMI  60
RAELDQTFME TKRNKLLWEV IATKMKDKGY NRSPEQCKCK WKNLVTRYKG CETLEPEALR  120
QQFPFYNELQ AIFAARMQRM LWIEAEGGGG SKKKTISQLS SDEEEENEDS EGEKVVGITK  180
KKRKVKGNNV NIVGSSSSGG SGNLVNSFKE ILDDFMKQQM AMEMQWLKAY EAKEEERRIK  240
EMEWRQTMEA LENERLMMER RWREREEQRR IREEARAEKR DALITALLNK LRREDHNM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A1e-1245128386DNA binding protein GT-1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1179184KKKRKV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00481DAPTransfer from AT5G01380Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-125HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799172.10.0PREDICTED: trihelix transcription factor GT-3b-like
RefseqXP_016459805.10.0PREDICTED: trihelix transcription factor GT-3b-like
SwissprotQ9SDW08e-72TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A1S3Z5Q50.0A0A1S3Z5Q5_TOBAC; trihelix transcription factor GT-3b-like
TrEMBLA0A1U7Y4X80.0A0A1U7Y4X8_NICSY; trihelix transcription factor GT-3b-like
STRINGXP_009799172.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41872343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01380.18e-56Trihelix family protein