PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GATA

Protein Properties

Length: 332aa MW: 36324.6 Da PI: 4.7883

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016459801.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	49.1	7.6e-16	207	243	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgpdg++tLCnaCGl+++ kg+ XP_016459801.1 207 CHHCGVSEncTPAMRRGPDGPRTLCNACGLKWANKGT 243 **********************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51320	12.332	69	104	IPR010399	Tify domain
SMART	SM00979	5.3E-7	69	104	IPR010399	Tify domain
Pfam	PF06200	3.7E-9	73	103	IPR010399	Tify domain
PROSITE profile	PS51017	12.689	134	176	IPR010402	CCT domain
Pfam	PF06203	9.0E-15	134	175	IPR010402	CCT domain
SMART	SM00401	5.5E-12	201	254	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	3.09E-11	204	254	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.6E-13	206	248	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	1.67E-15	206	253	No hit	No description
PROSITE profile	PS50114	8.603	206	259	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	207	234	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	8.7E-14	207	243	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 332 aa Download sequence Send to blast
MMSGNPRPLQ ARPYEDHGPL QSIQMEEEEE DDDGTYEDYG GEETMDEAEE IRTKVLNHHQ 60 YGGGGGVVEV SRSSELTLAF EGEVYVFPAV TPEKVQAVLL LLGECDIPTA VPTVEVPFDN 120 TVEDFPKQVN LSRRFASLVR FREKRKERCF DKKIRYSVRK EVAQRMHRKN GQFASLKASS 180 GSSSCDSAKS SLEGDGTQHS ETVPGKCHHC GVSENCTPAM RRGPDGPRTL CNACGLKWAN 240 KGTLRDLSKG ARKISVEPKE LGTPDNPMKA FAEGSLDQCA DVEKNLFGAG SNLANEIPVG 300 IISPSCNLVE QETLVDIGNA SKTEIDIPAN FD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU041360	2e-50	CU041360.9 S.lycopersicum DNA sequence from clone SL_MboI-129D14 on chromosome 4, complete sequence.
GenBank	HG975516	2e-50	HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016459801.1	0.0	PREDICTED: GATA transcription factor 19-like isoform X1
Swissprot	Q8GXL7	8e-66	GAT24_ARATH; GATA transcription factor 24
TrEMBL	A0A1S3Z5X9	0.0	A0A1S3Z5X9_TOBAC; GATA transcription factor 19-like isoform X1
STRING	XP_009612622.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5602	20	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21175.2	2e-59	ZIM-like 1

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376]