PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016459588.1
Common NameNtSIP1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Trihelix
Protein Properties Length: 320aa    MW: 35236.7 Da    PI: 8.4433
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016459588.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix42.41.8e-1359149186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     +W++  +++L+ea  +   +l+rg+l+++ W+ev++++     + ++  r+ +qCk++++ l+k+yk +k++ ++ + + +s +p+f+ l+
  XP_016459588.1  59 CWSEAATHTLVEAWGSHYLELKRGNLRQKYWQEVANAVnalhgHTKKQYRTDIQCKNRIDTLKKKYKIEKARVSQSHGRYVSPWPFFNGLD 149
                     7*************************************999987778889**********************9999999999******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.0E-2457151No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MSDDDLVASP SSNNNSSSLP PSPSPPPPST NTELAIPPPP PTIQPASTRP AAFPAREDCW  60
SEAATHTLVE AWGSHYLELK RGNLRQKYWQ EVANAVNALH GHTKKQYRTD IQCKNRIDTL  120
KKKYKIEKAR VSQSHGRYVS PWPFFNGLDD LIGDNFKSSP APVTVAPRRK TPPMLLPLPS  180
AVPVGPRSKR PAASMEDTVS RRNFSAMAAA AAAAASEESD EEEESETSSP AAITLAGARK  240
EESGALAEGC SRLAEAIGRF AEIYERVEDA KQRQMVELEK QRMQFAKDLE IQRMKLIMES  300
QVQLEKLKRA KSNSQADGYL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0723910.0AB072391.1 Nicotiana tabacum NtSIP1 mRNA for 6b-interacting protein 1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016459588.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A1S3Z5A90.0A0A1S3Z5A9_TOBAC; trihelix transcription factor ASIL2-like
STRINGXP_009614096.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13182370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.13e-74sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Kitakura S, et al.
    The protein encoded by oncogene 6b from Agrobacterium tumefaciens interacts with a nuclear protein of tobacco.
    Plant Cell, 2002. 14(2): p. 451-63
    [PMID:11884686]