 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_016459437.1 |
| Common Name | HD2c |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
C2H2 |
| Protein Properties |
Length: 282aa MW: 30399.9 Da PI: 4.4704 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016459437.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 12.2 | 0.00055 | 257 | 278 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23
C+ C+++F + L++H + H
XP_016459437.1 257 CKTCSRTFGSETALESHSKAkH 278
*****************88777 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0009651 | Biological Process | response to salt stress |
| GO:0009737 | Biological Process | response to abscisic acid |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 282 aa
Download sequence Send
to blast |
MEFWGAEVKS GQPLTVQPGD DMVLHLSQAS LGEAKKDKGS EPVCLSVNVD GKKLALGTLN 60
LDKLPQQQFD LVFDRDFELS HNWKNGSVYF FGYKAANPYE QEEDEDESDE EIPLTLANTG 120
KSEAKASAND SASGKQKVKI AEPSKDAKAD DEDDSSDEDD TSEDEEDSEM GEDEDDSDED 180
QSDEETPKKA EPSKKRPSDS AIKTPAPDKK AKFATPQKTD GKKGAVHVAT PHPSKQAGKT 240
SGNKSNQTPK SGGSLACKTC SRTFGSETAL ESHSKAKHSV GK
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Mediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By fertilization. {ECO:0000269|PubMed:15082924}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | FJ903176 | 0.0 | FJ903176.1 Nicotiana tabacum cultivar Xanthi type 2 histone deacetylase c (HD2c) mRNA, complete cds. |
