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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016459318.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 151aa MW: 16938.4 Da PI: 9.954 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00042 | 36 | 58 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k+Fs+ L H +H XP_016459318.1 36 FECKTCNKRFSSFQALGGHRTSH 58 89**********99998888777 PP | |||||||
2 | zf-C2H2 | 12.7 | 0.00037 | 80 | 102 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg+ F L H+r+H XP_016459318.1 80 HQCSICGMEFFMGQALGGHMRRH 102 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.11 | 36 | 58 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.4E-11 | 36 | 60 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.27E-8 | 36 | 102 | No hit | No description |
PROSITE profile | PS50157 | 10.866 | 36 | 63 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 38 | 58 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.093 | 80 | 102 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.099 | 80 | 107 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.2E-9 | 80 | 104 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 82 | 102 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 151 aa Download sequence Send to blast |
MAAMKRSRED DSEVEAQAMA NCSMLLSRLN NNTSSFECKT CNKRFSSFQA LGGHRTSHKS 60 LRSSSIDARS KSKKPKNNMH QCSICGMEFF MGQALGGHMR RHRAPVNVPV LNKSNSSKRI 120 LCLDLNLTPD DQNDDFMLWP TAPAPVLRCF I |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009779269.1 | 1e-109 | PREDICTED: zinc finger protein ZAT11-like | ||||
Refseq | XP_016459318.1 | 1e-109 | PREDICTED: zinc finger protein ZAT11-like | ||||
Swissprot | Q9SLD4 | 2e-35 | ZAT11_ARATH; Zinc finger protein ZAT11 | ||||
TrEMBL | A0A1S3Z4I9 | 1e-108 | A0A1S3Z4I9_TOBAC; zinc finger protein ZAT11-like | ||||
TrEMBL | A0A1U7WX56 | 1e-108 | A0A1U7WX56_NICSY; zinc finger protein ZAT11-like | ||||
STRING | XP_009779269.1 | 1e-109 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA366 | 24 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37430.1 | 8e-38 | C2H2 family protein |