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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016459247.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 137aa MW: 15232.2 Da PI: 4.4691 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.5 | 0.00091 | 108 | 122 | 2 | 16 |
EETTTTEEESSHHHH CS zf-C2H2 2 kCpdCgksFsrksnL 16 +C++C+k+Fs +++L XP_016459247.1 108 TCEICNKVFSPNYTL 122 7********998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51292 | 22.477 | 59 | 119 | IPR011016 | Zinc finger, RING-CH-type |
Gene3D | G3DSA:3.30.40.10 | 6.4E-19 | 65 | 116 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SuperFamily | SSF57850 | 6.1E-16 | 65 | 116 | No hit | No description |
SMART | SM00744 | 3.7E-21 | 66 | 113 | IPR011016 | Zinc finger, RING-CH-type |
Pfam | PF12906 | 1.6E-13 | 67 | 112 | IPR011016 | Zinc finger, RING-CH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
MVDEFMVCVD RIIIATTCFG ESESVVNGRE ISLLTNNDVA NLSVENNSRE MTSGGEGCSK 60 GSVIRECRIC QEEDEENDME APCACNGTLK FAHRKCIQRW CNKKGDITCE ICNKVFSPNY 120 TLPPARSNPD VMAIDIR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009776076.1 | 2e-97 | PREDICTED: uncharacterized protein LOC104225893 | ||||
TrEMBL | A0A1U7WFQ0 | 5e-96 | A0A1U7WFQ0_NICSY; uncharacterized protein LOC104225893 | ||||
STRING | XP_009776076.1 | 9e-97 | (Nicotiana sylvestris) |