PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016459221.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 623aa    MW: 69284.5 Da    PI: 5.0139
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016459221.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.51.8e-09507555348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT +E  +lv++v+++G g+W+ I r        Rt  ++k++w+++l
   XP_016459221.1 507 PWTIDEVVKLVEGVARYGAGRWSEIKRLAFascPYRTSVDLKDKWRNLL 555
                      8****************************999*9*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.269500559IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.1E-14501558IPR009057Homeodomain-like
SuperFamilySSF466892.39E-16502560IPR009057Homeodomain-like
SMARTSM007172.0E-8504557IPR001005SANT/Myb domain
CDDcd116609.10E-19506556No hitNo description
PfamPF002493.9E-7507555IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MEANEADIEG SVFPVTNTLG ALEKEIADPI VYQLVRVDGD GRLVPATQDE IMVVEDLLED  60
DKCEPKLVPD TRQTTESCKT EGCLMERNPF QAPEGKLEYE NPKVVAEKSN ASVDKVPDLE  120
KMGAPEKVTV HGSAPCSELS NIDLSGRTEI SFNSEDALNE DTPSTSASSS WKPDFSKLEG  180
KICLDNLTVK ELQETFKATF GRETSVKDKQ WLKRRITMGL TNSCDFSCTT FIIRDNLVVR  240
KGEEQISHPV KVRISADPEV GVANSDSGGS LGDRDNRVND DANFSGTDVP SSAFESCNVT  300
KDLYAEQGTA KRVRKPTKRY IEELSEIEET SEKLPSSDKV SRYRFPCTES LMRPTTNVRS  360
NARPLFTRQD SLGGSGVQIP FVSRIRRSRP RENFTSLLKL QPSDMDMATR QVRSVFDASG  420
PQEDDKRNND LIKTSSTPGW TKQPLIAACE KDEHYSGMRI VELENDMNED NSDDNVELND  480
GFEDNSDDNV ISVPTPKGGM RRKHHRPWTI DEVVKLVEGV ARYGAGRWSE IKRLAFASCP  540
YRTSVDLKDK WRNLLKASFV QLPAEKGMLN SRKQASVPIP APILSRVREL ADMQGQFQPI  600
LSTGKSSGHS SGRSVHEARS GYL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016459221.10.0PREDICTED: uncharacterized protein LOC107782799 isoform X2
TrEMBLA0A1S3Z4470.0A0A1S3Z447_TOBAC; uncharacterized protein LOC107782799 isoform X2
STRINGXP_009602392.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.14e-95TRF-like 6