PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016459079.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

HD-ZIP

Protein Properties

Length: 823aa MW: 90570 Da PI: 6.214

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016459079.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.8	4.3e-19	16	74	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++++++ps +r++L +++ +++ rq+kvWFqNrR +ek+ XP_016459079.1 16 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsHIEPRQIKVWFQNRRCREKQ 74 5679*****************************************************97 PP
2	START	179.1	2.5e-56	147	355	2	205
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++++e+l+ + ++ g+++l XP_016459079.1 147 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGMAARACGLVGLDPT-RVAEILKDRPSWYRDCRAVEVLNMLPTAngGTIELL 240 789*****************************************************.8888888888************9999** PP EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS START 95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185 +++l+a+++l+p Rdf+ +Ry+ + +g++v++++S+ ++q+ p+ +++vRae+lpSg+li+p+++g+s v++v+h+dl++++++++lr+l+ XP_016459079.1 241 YMQLYAPTTLAPpRDFWLLRYSTVMDDGSLVVCERSLGNTQNGPSmppVQNFVRAEMLPSGYLIRPCEGGGSIVHIVDHMDLEAWSVPEVLRPLY 335 **************************************99988899***************************************** PP HHHHHHHHHHHHHHTXXXXX CS START 186 ksglaegaktwvatlqrqce 205 +s+++ ++kt +a+l+++++ XP_016459079.1 336 ESSAVLAQKTSMAALRQLRQ 355 **************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.758	11	75	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.99E-17	13	77	IPR009057	Homeodomain-like
SMART	SM00389	2.3E-16	13	79	IPR001356	Homeobox domain
CDD	cd00086	8.29E-17	16	76	No hit	No description
Pfam	PF00046	1.1E-16	17	74	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	1.5E-18	18	74	IPR009057	Homeodomain-like
PROSITE profile	PS50848	26.931	137	352	IPR002913	START domain
CDD	cd08875	9.60E-76	141	356	No hit	No description
Gene3D	G3DSA:3.30.530.20	7.8E-25	146	352	IPR023393	START-like domain
SuperFamily	SSF55961	1.24E-37	146	351	No hit	No description
SMART	SM00234	8.4E-43	146	356	IPR002913	START domain
Pfam	PF01852	1.5E-53	147	355	IPR002913	START domain
Pfam	PF08670	1.5E-50	680	822	IPR013978	MEKHLA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 823 aa Download sequence Send to blast
MSMSCKDGKS VDDNGKYVRY TPEQVEALER LYHECPKPSS MRRQQLIREC PILSHIEPRQ 60 IKVWFQNRRC REKQRKESSR LQGVNRKLSA MNKLLMEEND RLQKQVSQLT KIASKDTSCE 120 SVVTSGQHHL APQHPPRDAS PAGLLSIAEE TLTEFLSKAT GTAVEWVQMP GMKPGPDSIG 180 IIAISHGCTG MAARACGLVG LDPTRVAEIL KDRPSWYRDC RAVEVLNMLP TANGGTIELL 240 YMQLYAPTTL APPRDFWLLR YSTVMDDGSL VVCERSLGNT QNGPSMPPVQ NFVRAEMLPS 300 GYLIRPCEGG GSIVHIVDHM DLEAWSVPEV LRPLYESSAV LAQKTSMAAL RQLRQITLEA 360 SQPNVTNWGR RPAALRALSK KLSRGFNEAL NGFSSEGWSM LDNDGMDDVT ILVNSSPDKL 420 MGLNLSFADE FTSLSNAVLC AKASMLLQSV TPAVLLRFLR EHRSEWVDSD IDAYAAAAVK 480 VGPCSLPGAR VCNFGGQVIL PLAHTAEHEE LLEVIKLEGV CHSPEDVIMP RDMFLLQMCS 540 GMDENAVGTC AELIFAPIDA SFADDAPLLP SGFRIIPLDS AKEASSPNRT LDLTSALEIG 600 PAESKVVNDK STGVTSKSIM TIAFQFAFES HMQENVASMA RKYVRSFISS VQRVALALSP 660 SHFGSLGGLR LPLGTPEAHT LARWICQSYR HYLGVELPKL SGEGSESVLE SLWQHSDAII 720 CCSAKALPVF TFANQAGLDM LETTLVALQD ISLEKIFDEH GRKNLCSEFP QIMQQGFACL 780 RGGICLSSMG RPVSYEKAVA WKVVNEEDNA HCISFMFVNW SFI

Sequence ? help Back to Top

Protein Sequence Length: 823 aa Download sequence Send to blast

MSMSCKDGKS VDDNGKYVRY TPEQVEALER LYHECPKPSS MRRQQLIREC PILSHIEPRQ  60
IKVWFQNRRC REKQRKESSR LQGVNRKLSA MNKLLMEEND RLQKQVSQLT KIASKDTSCE  120
SVVTSGQHHL APQHPPRDAS PAGLLSIAEE TLTEFLSKAT GTAVEWVQMP GMKPGPDSIG  180
IIAISHGCTG MAARACGLVG LDPTRVAEIL KDRPSWYRDC RAVEVLNMLP TANGGTIELL  240
YMQLYAPTTL APPRDFWLLR YSTVMDDGSL VVCERSLGNT QNGPSMPPVQ NFVRAEMLPS  300
GYLIRPCEGG GSIVHIVDHM DLEAWSVPEV LRPLYESSAV LAQKTSMAAL RQLRQITLEA  360
SQPNVTNWGR RPAALRALSK KLSRGFNEAL NGFSSEGWSM LDNDGMDDVT ILVNSSPDKL  420
MGLNLSFADE FTSLSNAVLC AKASMLLQSV TPAVLLRFLR EHRSEWVDSD IDAYAAAAVK  480
VGPCSLPGAR VCNFGGQVIL PLAHTAEHEE LLEVIKLEGV CHSPEDVIMP RDMFLLQMCS  540
GMDENAVGTC AELIFAPIDA SFADDAPLLP SGFRIIPLDS AKEASSPNRT LDLTSALEIG  600
PAESKVVNDK STGVTSKSIM TIAFQFAFES HMQENVASMA RKYVRSFISS VQRVALALSP  660
SHFGSLGGLR LPLGTPEAHT LARWICQSYR HYLGVELPKL SGEGSESVLE SLWQHSDAII  720
CCSAKALPVF TFANQAGLDM LETTLVALQD ISLEKIFDEH GRKNLCSEFP QIMQQGFACL  780
RGGICLSSMG RPVSYEKAVA WKVVNEEDNA HCISFMFVNW SFI

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269\|PubMed:15598805, ECO:0000269\|PubMed:15705957, ECO:0000269\|PubMed:16617092}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269\|PubMed:15773855, ECO:0000269\|PubMed:16033795, ECO:0000269\|PubMed:16617092, ECO:0000269\|PubMed:17237362}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016459079.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X2
Refseq	XP_018626312.1	0.0	PREDICTED: homeobox-leucine zipper protein ATHB-15-like isoform X2
Swissprot	Q9ZU11	0.0	ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBL	A0A1S3Z3S7	0.0	A0A1S3Z3S7_TOBAC; homeobox-leucine zipper protein ATHB-15-like isoform X2
STRING	XP_009600774.1	0.0	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.1	0.0	HD-ZIP family protein

Publications ? help Back to Top
Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules. Development, 2016. 143(3): p. 422-6 [PMID:26700684]