PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016459047.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 503aa    MW: 55607.3 Da    PI: 5.0443
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016459047.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS337.91.8e-1031174971374
            GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar..svselykal.ppsetseknsseelaalklfsevsP 89 
                     lv+lL+++Aea++  +++  la+ +L rl+elasp+g ++m+Rlaa+ft AL+a l +  s+s  +k++ +p+ ++e+++ ++laa++l++++sP
  XP_016459047.1 117 LVHLLMAAAEALTGVNKSreLARVVLVRLKELASPNGsTNMERLAAHFTDALQALLDGaaSGSLHAKSMfSPNYKDEQQQGDVLAAFQLLQDISP 211
                     68***********85554449****************99*****************994333333344447777888889*************** PP

            GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnv 180
                     ++kf+h+taNqaIleav++++rvHi+D+di++G+QW++L+qaL sR++gpp  +lRiT+++++ sg  s  +++etg+rL+ fA ++g pf+f+ 
  XP_016459047.1 212 FVKFGHFTANQAILEAVAHDRRVHIVDYDIMEGIQWASLMQALVSRKDGPPtpHLRITALSRSGSGrrSFGTVQETGRRLTAFAGSIGQPFSFHH 306
                     ***********************************************776556*********888899999************************ PP

            GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh..nsesFlerflealeyysalfdslea 273
                        ++ e++++++L++ +gEa+++n++l+l ++  +  ++     ++L+  k+l+P++v++ve+e++   ++e F+ rf++ l++ysal+dslea
  XP_016459047.1 307 CRLDSDETFKPSTLKLVRGEAIIINCMLHLPHFTYRASDS---VASFLSGSKTLNPRLVTLVEEEVQPigEEEGFVGRFMDILHHYSALYDSLEA 398
                     9999****************************98554444...459*******************998777889********************* PP

            GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpL 367
                     ++p +s++r+ vEr++lg++i+  +a   + r e+++   +W e+l+++G+++ ++s  + +qaklll  ++ dgyrvee   + lvlgWk+r+L
  XP_016459047.1 399 GFPLQSRARALVERVFLGPRITGSLARIYRTRGEDER--CSWGEWLSAVGYRESNISFANHCQAKLLLGLFN-DGYRVEEIgTNKLVLGWKSRRL 490
                     *******************************988887..89*******************************.******9768999********* PP

            GRAS 368 vsvSaWr 374
                     +s+S W+
  XP_016459047.1 491 LSASIWT 497
                     ******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098552.57791477IPR005202Transcription factor GRAS
PfamPF035146.4E-101117497IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MATMIVDDTI PDFDYYGGLS TPTTTTTTTT TSFSDDDRDH GCTWNDWSAV IDLDAFSGGD  60
NFQDLIESMI EGNNSSGGLN MNIPKSTTFY NSEDSVLMEE SEESNNNQSE DVNGLKLVHL  120
LMAAAEALTG VNKSRELARV VLVRLKELAS PNGSTNMERL AAHFTDALQA LLDGAASGSL  180
HAKSMFSPNY KDEQQQGDVL AAFQLLQDIS PFVKFGHFTA NQAILEAVAH DRRVHIVDYD  240
IMEGIQWASL MQALVSRKDG PPTPHLRITA LSRSGSGRRS FGTVQETGRR LTAFAGSIGQ  300
PFSFHHCRLD SDETFKPSTL KLVRGEAIII NCMLHLPHFT YRASDSVASF LSGSKTLNPR  360
LVTLVEEEVQ PIGEEEGFVG RFMDILHHYS ALYDSLEAGF PLQSRARALV ERVFLGPRIT  420
GSLARIYRTR GEDERCSWGE WLSAVGYRES NISFANHCQA KLLLGLFNDG YRVEEIGTNK  480
LVLGWKSRRL LSASIWTTPD SDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A9e-601024974379Protein SCARECROW
5b3h_A1e-591024973378Protein SCARECROW
5b3h_D1e-591024973378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking and DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK). {ECO:0000269|PubMed:15961668}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced 24 hours after treatment with Nod factor or Sinorhizobium meliloti. {ECO:0000269|PubMed:15961668}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799696.10.0PREDICTED: nodulation-signaling pathway 2 protein
RefseqXP_016459047.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
SwissprotQ5NE240.0NSP2_MEDTR; Nodulation-signaling pathway 2 protein
TrEMBLA0A1S3Z4C00.0A0A1S3Z4C0_TOBAC; nodulation-signaling pathway 2 protein-like
TrEMBLA0A1U7YCK80.0A0A1U7YCK8_NICSY; nodulation-signaling pathway 2 protein
STRINGXP_009799696.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA122411923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-153GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]