PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016459040.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 244aa    MW: 27324 Da    PI: 9.0261
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016459040.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.7e-087091425
                    ---SGGGGTS--TTTTT-SS-S CS
         zf-CCCH  4 elCrffartGtCkyGdrCkFaH 25
                    ++C  f r G C+yGd C++aH
  XP_016459040.1 70 PPCLQFKRWGSCSYGDECRYAH 91
                    89******************** PP
2zf-CCCH38.51.9e-12153178227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+ C ++ rtGtC yG++C+FaHg+
  XP_016459040.1 153 KTRFCINWERTGTCAYGSKCQFAHGK 178
                     7788********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.766794IPR000571Zinc finger, CCCH-type
SMARTSM003560.00336793IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-67091IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.27E-57094IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.3E-67191IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-9150182IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6151178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.211151179IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-14151182IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-10153178IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MPANNFGISY KHEDEENYSN HWPRFITSGQ KCGINSNAEY QAFKRPKMMN SKMGLEDNRS  60
NVAMTVGPQP PCLQFKRWGS CSYGDECRYA HITGPLKGIR VEDQRNLSKV KSCHFFGSGF  120
CRISSAISIA TIGREVRNNT SSDAVDLRIK LLKTRFCINW ERTGTCAYGS KCQFAHGKAE  180
LQTLGSSNTL ESLGSAGICA PAKNAASECR FLFKWTNVQK ISQIYADWIE RVQLVPLSSH  240
TVEN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620362.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X3
RefseqXP_016459040.10.0PREDICTED: zinc finger CCCH domain-containing protein 39-like isoform X3
TrEMBLA0A1S3Z3M80.0A0A1S3Z3M8_TOBAC; zinc finger CCCH domain-containing protein 39-like isoform X3
STRINGXP_009620360.11e-179(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-15C3H family protein