PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016458837.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 154aa    MW: 17209.2 Da    PI: 8.6876
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016458837.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.11.9e-105880527
                    --SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                     C++f rtG+C+yGd+Ck+ H++
  XP_016458837.1 58 VCNHFVRTGYCQYGDSCKYYHPK 80
                    6********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004515.4E-4338IPR003604Zinc finger, U1-type
SuperFamilySSF576671.35E-15453No hitNo description
PfamPF062201.1E-9538IPR013085Zinc finger, U1-C type
SMARTSM003564.1E-55380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2065381IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-75681IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.0E-75880IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-85880IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MPLGKYYCDY CDKEFQDTAA ARKRHLQGVQ HQRAKALWYD SLRNPQLYND PDSFGKGVCN  60
HFVRTGYCQY GDSCKYYHPK QNSQNVQQTG IPPGTTTREG IHLKSVPNSQ PFGSASFPGD  120
VFKENAGAKL GNLPPSLRPP PEGGYPPLPF VDWG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2389102e-33AC238910.2 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-131o24 map 1, complete sequence.
GenBankAC2389482e-33AC238948.6 Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-1h15 map 1, complete sequence.
GenBankHG9754402e-33HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755132e-33HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009615872.11e-113PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X2
RefseqXP_016458837.11e-113PREDICTED: zinc finger CCCH domain-containing protein 3-like
SwissprotQ0JP114e-49C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A1S3Z3T61e-111A0A1S3Z3T6_TOBAC; zinc finger CCCH domain-containing protein 3-like
STRINGXP_009615870.11e-110(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA120081821
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.18e-32C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]