 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
XP_016458827.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
LBD |
| Protein Properties |
Length: 202aa MW: 22121.3 Da PI: 4.7971 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016458827.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 138 | 3.2e-43 | 49 | 148 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95
+CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpee+r da++s+vyeA+ar+rdPvyG++gvi +lq+q++ l+ae a
XP_016458827.1 49 PCAACKILRRRCVDKCVLAPYFPPTDPLKFTIAHRVFGASNIIKMLQELPEEQRADAVNSMVYEANARIRDPVYGCAGVICQLQKQISGLQAEFA 143
7********************************************************************************************** PP
DUF260 96 llkee 100
++++e
XP_016458827.1 144 KAQAE 148
*9987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 202 aa
Download sequence Send
to blast |
MECSDNKTTT ISSLTANIVS ATTTSSELIS PRSIISAPPS PPPPVILTPC AACKILRRRC 60
VDKCVLAPYF PPTDPLKFTI AHRVFGASNI IKMLQELPEE QRADAVNSMV YEANARIRDP 120
VYGCAGVICQ LQKQISGLQA EFAKAQAEIL NLKCQNSNLL ALVCMEVTEY QENSSSSNDY 180
GNNTSLFLED NSVYAAWEPL WT
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HG975517 | 1e-62 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
