PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016458780.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GATA
Protein Properties Length: 545aa    MW: 60778 Da    PI: 7.6664
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016458780.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.46.2e-16741135
            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  XP_016458780.1  7 CYHCGVTSTPLWRNGPPEKPILCNACGSRWRTKGT 41
                    ****************66666***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.4E-10153IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.52E-11445No hitNo description
CDDcd002022.23E-16655No hitNo description
PfamPF003201.0E-13741IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.2740IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.8E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS003440732IPR000679Zinc finger, GATA-type
PfamPF139191.0E-7287366IPR028020ASX homology domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MGKEGPCYHC GVTSTPLWRN GPPEKPILCN ACGSRWRTKG TLANYTPLHA RAEPCDFEEH  60
RVSRFKNMSS TKNKDAKVLK RKQTHDMVEV GTPPDYNFGF RKCLDEDTSN RSSSGSVVSN  120
SESCAQFGSA EASDLTGPAQ SNIWDTTVPS KKRTCFNRPK PSSVEKLTKD LYTILHEQQQ  180
SSCFSASSEE DLLFESEKPM VSVEIGHGSM LIRHPSSIGR EESSEASSLS VENKHRSVNE  240
AYSRLTTPPV NISRGVDSPN SGTERTKKPT GQVVEQNQIK RNKDHLENLQ ILGHHNSPLR  300
YIELKDVLNF EEFMRHLSSD DQQQLLKYLP PVDSFAPPDS LRSMFESSQF EENLSSFQKL  360
LAEGVFDNSL PGVKLEDCRT LKRFILCYLS KSKWVEQYNL LKDTKCKNSS SGSEVAGERS  420
VIGTCHSVTV KRPQERQHLK YSGAKTTMKS PKSVVMKSIY EQKEPLDNDG SCSSPKSSFA  480
LPSETSSLVL DSFRSANENS DQDLLLNVPS NSYFPQAELL LPTSSFTPQA STSSSSMYPS  540
HLVRP
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754471e-134HG975447.1 Solanum pennellii chromosome ch08, complete genome.
GenBankHG9755201e-134HG975520.1 Solanum lycopersicum chromosome ch08, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009613626.10.0PREDICTED: GATA transcription factor 26-like
RefseqXP_016458780.10.0PREDICTED: GATA transcription factor 26-like
SwissprotQ8W4H11e-147GAT26_ARATH; GATA transcription factor 26
TrEMBLA0A1S3Z2W70.0A0A1S3Z2W7_TOBAC; GATA transcription factor 26-like
STRINGXP_009613626.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20892462
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.31e-149GATA transcription factor 26