PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016458480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C3H | ||||||||
Protein Properties | Length: 706aa MW: 78500.7 Da PI: 6.1072 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.5 | 4.1e-07 | 115 | 139 | 5 | 26 |
--SGGGGTS...--TTTTT-SS-SS CS zf-CCCH 5 lCrffartG...tCkyGdrCkFaHg 26 +C+ a+tG C+y d+C+F+H+ XP_016458480.1 115 ICPEVAKTGkvsACPYSDKCRFSHD 139 5999********************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00642 | 1.2E-4 | 115 | 139 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.756 | 115 | 141 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 8.305 | 154 | 179 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:3.20.20.70 | 1.2E-72 | 350 | 593 | IPR013785 | Aldolase-type TIM barrel |
CDD | cd02801 | 1.44E-90 | 354 | 589 | No hit | No description |
SuperFamily | SSF51395 | 7.85E-63 | 354 | 667 | No hit | No description |
Pfam | PF01207 | 2.0E-51 | 357 | 624 | IPR001269 | tRNA-dihydrouridine synthase |
PROSITE pattern | PS01136 | 0 | 438 | 456 | IPR018517 | tRNA-dihydrouridine synthase, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008033 | Biological Process | tRNA processing | ||||
GO:0055114 | Biological Process | oxidation-reduction process | ||||
GO:0017150 | Molecular Function | tRNA dihydrouridine synthase activity | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0050660 | Molecular Function | flavin adenine dinucleotide binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 706 aa Download sequence Send to blast |
MENETLTDSS PAATTTEHPE APVQQPSSNT DDGGVSQPFR TPEELVAKAI APVKREYLRP 60 PPSRPSNNND SNNSTVGVEN DDAAEAKSAP ILKEKKSKRQ IKRERRQEQK SPLHICPEVA 120 KTGKVSACPY SDKCRFSHDL EAFKAEKPAD IEGSCPFLVY EGPCPYGLAC RFAGTHEDDV 180 STQTEKISRK SSELNFFNKD TQKLLWKNKM KFPKAEATLK LLGLKGHPKD KILVDKEENG 240 EVVLKEPATD TKTDSNEAAS DCSNKVEITP SISPEDDVVE NNLADDIRPL KKAKSSIDEI 300 CSSQASNGSS VQGEVLDSNC DVNKSDPTAD MVTDSDKSLK LHPREKKLID FRDKLYLAPL 360 TTVGNLPFRR VCKVLGADVT SGEMAMCTNL LQGQASEWAL LRRHSSENLF GVQICGAYPD 420 TVTKTVELIE QECSVDFIDI NMGCPIDIVV NKGAGSALLT KPMRMKSVVE AASATVDIPI 480 TIKVRTAYFE GKNRIDSLIA DIGNWGATAV TIHGRSRQQR YSKLADWDYI YQCVQRAPKS 540 LQVLGNGDVF SYLDWNKHKT DSPELSTCMI ARGALIKPWI FTEIKEQRHW DITSGERLDI 600 LKDYARFGLE HWGSDSKGVE TTRHFLLEWL SYTCRYVPVG LLEIIPQRIN WRPPSYYGRD 660 DLETLMASDS AADWIRISEM LLGKVPAGFS FAPKHKSNAY DRAENG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ei9_A | 7e-28 | 351 | 598 | 27 | 266 | tRNA-dihydrouridine synthase B |
6ei9_B | 7e-28 | 351 | 598 | 27 | 266 | tRNA-dihydrouridine synthase B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM399253 | 0.0 | KM399253.1 Solanum tuberosum FMN-linked oxidoreductases superfamily protein mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016458480.1 | 0.0 | PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like | ||||
Swissprot | Q9T0J6 | 0.0 | DUS3L_ARATH; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like | ||||
TrEMBL | A0A1S3Z240 | 0.0 | A0A1S3Z240_TOBAC; tRNA-dihydrouridine(47) synthase [NAD(P)(+)] | ||||
STRING | XP_009768328.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8039 | 19 | 23 |
Publications ? help Back to Top | |||
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