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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016458466.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | AP2 | ||||||||
Protein Properties | Length: 643aa MW: 70871.2 Da PI: 7.2977 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51 | 3.6e-16 | 310 | 369 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_016458466.1 310 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 369 78*******************988886678446*************************98 PP | |||||||
2 | AP2 | 45.3 | 2.2e-14 | 414 | 463 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_016458466.1 414 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 463 9***************988532...5************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 8.7E-13 | 310 | 369 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.40E-22 | 310 | 377 | No hit | No description |
SuperFamily | SSF54171 | 1.05E-16 | 310 | 379 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 4.6E-16 | 311 | 378 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.203 | 311 | 377 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.8E-29 | 311 | 383 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-6 | 312 | 323 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-18 | 412 | 473 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.50E-25 | 412 | 473 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-18 | 413 | 471 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.282 | 413 | 471 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.9E-34 | 413 | 477 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-9 | 414 | 463 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-6 | 453 | 473 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 643 aa Download sequence Send to blast |
MKMKSMNDDN NNCSSHRSSN NNNNNNSNSH NDASSNWLGF SLSPHMKMEV TSSEPQHQHH 60 QFNNQSSALA QSFYLSSSPM NVTSNTSALC YGVGENNPFG HSSLSVMPLK SDGSLCIMEA 120 LSRSHADAMV QSSSSPKLED FLGGASQYGN HEREAMALSL DSLYYHQNEG YYSPMHCHGM 180 YQESLLDETK PTQISHCDAQ MTAVSGNELK SWGHYAIDQH INETCSSMVG AGGGGGTSGS 240 GGGTVGGNDL QSLSLSMNPG SQSSCVTPRQ ISPNELECVA IETKKRASGK VVQKQPVHRK 300 SIDTFGQRTS QYRGVTRHRW TGRYEAHLWD NSCKKEGQTR KGRQVYLGGY DMEEKAARAY 360 DLAALKYWGP STHINFPLEN YQKELEDMKN MTRQEYVAHL RRKSSGFSRG ASMYRGVTRH 420 HQHGRWQARI GRVAGNKDLY LGTFSTQEEA AEAYDVAAIK FRGVNAVTNF DISRYDVEKI 480 MASNTLPAGE LARRNKEREP IEYNLSDHKN EEACVQNDNN NNNGNNVTDW KMVSYQSSNP 540 SLGNYRNPTF SMALQDLIGI DLMNSSNHPI LDDQQNKIGN HFSNASSLVT SLGSSREASP 600 DKSAASLVFA KPTNVNACIP SAQLRPIPVS ISHLPVFAAL NDA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY461432 | 0.0 | AY461432.1 Nicotiana tabacum ANT-like protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001312262.1 | 0.0 | AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-161 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | Q6SA75 | 0.0 | Q6SA75_TOBAC; ANT-like protein | ||||
STRING | XP_009776255.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2074 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-143 | AP2 family protein |