PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016458356.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GRAS
Protein Properties Length: 502aa    MW: 55705.9 Da    PI: 6.6087
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016458356.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS419.43e-1281514981350
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+++L++cA+avs+gdl  aq l+++l++++s +g+p+qRl ay++e+L arla s+s+++k+l+++e +   s e l+++++++e++P++kf++
  XP_016458356.1 151 LKHVLIACAKAVSDGDLLTAQVLISELRQMVSVSGEPIQRLGAYILEGLVARLAASGSSICKSLRCKEPA---SFELLSYMHMLYEICPYFKFGY 242
                     689******************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN aI ea++ e+rvHiiDf+i qG QW++L+qa+a+Rp+gpp++R+Tg+++++s   +   l+ +g+rL+k+A++++vpfef++ +a + +d
  XP_016458356.1 243 MSANGAIAEAMKDENRVHIIDFQIAQGSQWVTLIQAFAARPGGPPHIRVTGIDDSTSAyaRGGGLNIVGQRLSKLAKAFKVPFEFHA-AAISGSD 336
                     ******************************************************998899999************************.8999*** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     +++e+L ++pgEalaVn+++ lh+++desvs+e++rd +L++vk+l+Pkvv++veqe+++n++ F+ rfle+l+yy+a+f+s++++lpr ++eri
  XP_016458356.1 337 VQVENLGIQPGEALAVNFAFTLHHIPDESVSTENHRDGLLRMVKNLNPKVVTLVEQESNTNTAAFFPRFLETLDYYTAMFESIDMTLPRGHKERI 431
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyr 350
                     +vE+++l+r++vn++aceg er+erhe l+kW++r+++aGF+p+pls+ +++++k+ll+ ++++ y+
  XP_016458356.1 432 NVEQHCLARDVVNIIACEGIERVERHELLGKWKSRFRMAGFSPYPLSSLVNATIKRLLESYSDKXYS 498
                     *************************************************************988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098570.183125502IPR005202Transcription factor GRAS
PfamPF035141.0E-125151498IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
MQASQRLRRS PMSNTLYYQP VQKAEACCLP QFQTLDNHLS YINGSHGFYH SPSTASFSSN  60
GSSICHQESQ PYLSDVRQSS ETTNYGSPTS GSCITDGAND FMHKLKELET VMLGPDSDFL  120
ESYDNSLPNS VASTEINSWR QMMEAMPRRD LKHVLIACAK AVSDGDLLTA QVLISELRQM  180
VSVSGEPIQR LGAYILEGLV ARLAASGSSI CKSLRCKEPA SFELLSYMHM LYEICPYFKF  240
GYMSANGAIA EAMKDENRVH IIDFQIAQGS QWVTLIQAFA ARPGGPPHIR VTGIDDSTSA  300
YARGGGLNIV GQRLSKLAKA FKVPFEFHAA AISGSDVQVE NLGIQPGEAL AVNFAFTLHH  360
IPDESVSTEN HRDGLLRMVK NLNPKVVTLV EQESNTNTAA FFPRFLETLD YYTAMFESID  420
MTLPRGHKER INVEQHCLAR DVVNIIACEG IERVERHELL GKWKSRFRMA GFSPYPLSSL  480
VNATIKRLLE SYSDKXYSSS SM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-541554958346GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0145720.0BT014572.1 Lycopersicon esculentum clone 134027R, mRNA sequence.
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016458356.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_016458357.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_016458358.10.0PREDICTED: scarecrow-like transcription factor PAT1
RefseqXP_016458359.10.0PREDICTED: scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A1S3Z1P50.0A0A1S3Z1P5_TOBAC; scarecrow-like transcription factor PAT1
STRINGXP_009784447.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]