PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Basic Information? help Back to Top

TF ID

XP_016458288.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

SBP

Protein Properties

Length: 225aa MW: 24075 Da PI: 7.2634

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016458288.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	67	3.8e-21	176	223	1	48
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 +C vegC+ dls+akeyhr+h+vC+ hsk+p+v++ g e+rfCqqCs XP_016458288.1 176 CCLVEGCNLDLSSAKEYHRKHRVCHSHSKCPKVIIGGAERRFCQQCSS 223 6*********************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	5.8E-21	170	222	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	19.025	174	225	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	4.32E-20	175	223	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.0E-16	177	223	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MEWNVKWDWG DLMMFGSEAC GSLKELQLTD WGVDQEGELD RRSFNLSGFG GSVGGYGSDM 60 GRSSSIKSSI SASTDSSPNE TLKASSFTFE ASNGSQGNLG KDVEQCRDEP YGCSPPMEAL 120 IGYDGPLTGL KLGKRTVESN SGGINVKLPS SSTIPVSSVS AAKKKKSSSQ NALIPCCLVE 180 GCNLDLSSAK EYHRKHRVCH SHSKCPKVII GGAERRFCQQ CSSLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj0_A	1e-13	176	222	5	51	squamosa promoter-binding protein-like 12
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016458284.1	1e-165	PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
Refseq	XP_016458285.1	1e-165	PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
Refseq	XP_016458286.1	1e-165	PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
Refseq	XP_016458287.1	1e-165	PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
Refseq	XP_016458288.1	1e-165	PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
Refseq	XP_016458289.1	1e-165	PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
Refseq	XP_016458291.1	1e-165	PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
Refseq	XP_016458292.1	1e-165	PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
Refseq	XP_016458293.1	1e-165	PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
Refseq	XP_016458294.1	1e-165	PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
Refseq	XP_016458295.1	1e-165	PREDICTED: squamosa promoter-binding-like protein 2 isoform X1
TrEMBL	A0A1S3Z1I8	1e-163	A0A1S3Z1I8_TOBAC; squamosa promoter-binding-like protein 2 isoform X1
STRING	XP_009796500.1	1e-161	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43270.3	1e-26	squamosa promoter binding protein-like 2