PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016458240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | B3 | ||||||||
Protein Properties | Length: 283aa MW: 32641.4 Da PI: 10.4076 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36 | 1.2e-11 | 195 | 265 | 16 | 88 |
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--.TT-EEEEEE-SS.S CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk.egDfvvFkldgr.s 88 +++p +fa+ g++k + ++tl + +g++W+v + + + r+++++GW F +n++ g+++ Fkl++ + XP_016458240.1 195 VTIPMTFARWSGIIKMK--KITLINGEGKKWKVDI--EHIGPRVLIKGGWAAFRTQNKIAaNGETCRFKLIQGrR 265 69******999999655..8***************..999999****************989*******996424 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.79E-14 | 5 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 9.4E-13 | 6 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.49E-7 | 9 | 100 | No hit | No description |
SMART | SM01019 | 6.7E-5 | 11 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.5E-8 | 21 | 97 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.603 | 22 | 105 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.2E-12 | 177 | 264 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.65E-13 | 177 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 9.784 | 180 | 281 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 0.0031 | 183 | 271 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-9 | 195 | 263 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 283 aa Download sequence Send to blast |
MLVDPDKYPS FCKLLFRQGF MDKILMPPVF IKENKKKLAK TCLLKTDIAA GMSWEAKIVK 60 ENSHFFICDG EWPKFVAHHK LKLGDILLFF LVDKSTFHIL PYGQKTCKNL CRRQLFEELS 120 SSSEEEEECD VGIRLSRKSK KVKTEPKELP GVAEEEAQNR SKENGPKTLR YSVVNLKNKN 180 PYYEMAVRKT HSLFVTIPMT FARWSGIIKM KKITLINGEG KKWKVDIEHI GPRVLIKGGW 240 AAFRTQNKIA ANGETCRFKL IQGRRRGRGR SCYVLQVEKI SKP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016458240.1 | 0.0 | PREDICTED: putative B3 domain-containing protein At5g66980 | ||||
TrEMBL | A0A1S3Z1H2 | 0.0 | A0A1S3Z1H2_TOBAC; putative B3 domain-containing protein At5g66980 | ||||
STRING | XP_009780425.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4888 | 13 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31690.1 | 7e-13 | B3 family protein |