PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016457898.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

NAC

Protein Properties

Length: 320aa MW: 36471.5 Da PI: 9.5455

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016457898.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	174.9	2.4e-54	18	144	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPt+eel+++yL kkv ++++ + +i evd++kvePwdLp k+k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkdke+++ XP_016457898.1 18 LPPGFRFHPTNEELITHYLSKKVVDNNFFA-IAIGEVDMNKVEPWDLPWKAKMGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKATGKDKEIFR- 110 79***********************877.78***********888999************************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfy+grapkge+t+Wv+heyrle XP_016457898.1 111 GKSLVGMKKTLVFYRGRAPKGERTNWVIHEYRLE 144 999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.05E-59	15	168	IPR003441	NAC domain
PROSITE profile	PS51005	56.812	18	168	IPR003441	NAC domain
Pfam	PF02365	1.1E-27	19	143	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MENFLGPGVK EEDQQLQLPP GFRFHPTNEE LITHYLSKKV VDNNFFAIAI GEVDMNKVEP 60 WDLPWKAKMG EKEWYFFCVR DKKYPTGLRT NRATAAGYWK ATGKDKEIFR GKSLVGMKKT 120 LVFYRGRAPK GERTNWVIHE YRLEGILSLQ NLPKTTKNDW VISRVFYKST GGNKVHISGL 180 MRLNSTETEM GNSVLPTLSD SESSHVHCFS NLVTAQKSQK EMTNYFNNSS IPSLPKKFAL 240 NQTLPPQATL LNPGSFPMQD PPSLRSLYQN YGQNMVQNLK KEKEIVSVSQ ETGVSTDMNN 300 EFSSSAAVVG PQYLDYLWNY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-54	8	174	5	171	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-54	8	174	5	171	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-54	8	174	5	171	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-54	8	174	5	171	NO APICAL MERISTEM PROTEIN
3swm_A	9e-54	8	174	8	174	NAC domain-containing protein 19
3swm_B	9e-54	8	174	8	174	NAC domain-containing protein 19
3swm_C	9e-54	8	174	8	174	NAC domain-containing protein 19
3swm_D	9e-54	8	174	8	174	NAC domain-containing protein 19
3swp_A	9e-54	8	174	8	174	NAC domain-containing protein 19
3swp_B	9e-54	8	174	8	174	NAC domain-containing protein 19
3swp_C	9e-54	8	174	8	174	NAC domain-containing protein 19
3swp_D	9e-54	8	174	8	174	NAC domain-containing protein 19
4dul_A	7e-54	8	174	5	171	NAC domain-containing protein 19
4dul_B	7e-54	8	174	5	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF510215	0.0	AF510215.1 Petunia x hybrida nam-like protein 18 (NH18) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016457898.1	0.0	PREDICTED: NAC domain-containing protein 100-like isoform X2
Swissprot	Q9FLJ2	1e-120	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A1S3Z0I2	0.0	A0A1S3Z0I2_TOBAC; NAC domain-containing protein 100-like isoform X2
STRING	XP_009803819.1	0.0	(Nicotiana sylvestris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-123	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]