PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016456929.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 463aa    MW: 52434.4 Da    PI: 5.0901
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016456929.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.8e-08344392348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                       W+t E ++lvd+v ++G g+W+ I r       +R++ ++k++w+++l
   XP_016456929.1 344 YWSTPEVLKLVDGVSKYGVGRWTDIKRLYFqssAHRSPPDLKDKWRNLL 392
                      6**************************9999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.6E-11337394IPR009057Homeodomain-like
PROSITE profilePS5129413.53337396IPR017930Myb domain
SuperFamilySSF466891.67E-15339421IPR009057Homeodomain-like
SMARTSM007175.5E-9341394IPR001005SANT/Myb domain
PfamPF002497.9E-6343392IPR001005SANT/Myb domain
CDDcd116602.36E-18345393No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MLGKVGQKCK MQSALDSLQY SSKTPNASAS IFRQEPEQVV GGASDYFASE EEAIGVEHLL  60
AEPEYDDIVD TLLDLKTCTF SVPESYFKDF SALESVDHDA LPTTLTEVDE TREKLLDGFS  120
NGYDENYCSI SCEDYLLDIE VEEETPTLHD VDISYIEDVN LENQLAGSDG KNCGIDVLKL  180
SDARNSSDYD SLLLDNRNCL QFDDMSSDKL LEVFRKMFGH QTSVTDKQWL KHHITFGLQN  240
QDMKCSLVSS EIEGAKVLPP ESREELLKAS TAFASVFNFR KKPRVQHVKR REHIQWNSFK  300
CLSEAQVDSS GILSDQSNDN TTSEDDWTIG TETPGTNQNR KHNYWSTPEV LKLVDGVSKY  360
GVGRWTDIKR LYFQSSAHRS PPDLKDKWRN LLRASRQCLK SRRGVAAKQN HGWSSIPHHV  420
LNRVQELAVI YPYPRKRRAR VLPTVFVASS STESDNRCFS LNA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755236e-39HG975523.1 Solanum lycopersicum chromosome ch11, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016456927.10.0PREDICTED: uncharacterized protein LOC107780842
RefseqXP_016456928.10.0PREDICTED: uncharacterized protein LOC107780842
RefseqXP_016456929.10.0PREDICTED: uncharacterized protein LOC107780842
TrEMBLA0A1S3YXT30.0A0A1S3YXT3_TOBAC; uncharacterized protein LOC107780842
STRINGXP_009619992.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.12e-21TRF-like 3