PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016455809.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | GATA | ||||||||
Protein Properties | Length: 227aa MW: 25086 Da PI: 5.7404 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 38.1 | 2.2e-12 | 8 | 36 | 7 | 35 |
GATA 7 tkTplWRrgpdgnktLCnaCGlyyrkkgl 35 ++TplWR gp ++ LCnaCG ++r kg+ XP_016455809.1 8 KDTPLWRPGPPEKPVLCNACGSRWRIKGS 36 56********88888**********9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 7.2E-4 | 1 | 50 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.3E-8 | 8 | 36 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 4.3E-10 | 8 | 36 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.99E-6 | 9 | 37 | No hit | No description |
CDD | cd00202 | 6.40E-10 | 10 | 48 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MPDDTEEKDT PLWRPGPPEK PVLCNACGSR WRIKGSLDDY IPKHANKETQ SFLLAKLPSD 60 VKPLVLAHDN QRLEVGQKVA GTDGSSACSE EKIDDISSSG SPGSFSENCM QMQGTNGEAA 120 KGPLWNPNSV PRRKRSKLKQ YILSPVERLH RQLYHMLQEP EFANTSANEE EILIYQKSKS 180 IPPDEIGNGA MLLISPSTAR EDSKPQFTTA ENNGSCSSNF RNENSSL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 139 | RRKRSKLKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016455809.1 | 1e-169 | PREDICTED: GATA transcription factor 26-like | ||||
TrEMBL | A0A1S3YUA6 | 1e-168 | A0A1S3YUA6_TOBAC; GATA transcription factor 26-like | ||||
STRING | XP_009626651.1 | 1e-147 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12582 | 10 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.1 | 5e-28 | GATA transcription factor 26 |