PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_016455805.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

LBD

Protein Properties

Length: 111aa MW: 12280.8 Da PI: 6.3358

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016455805.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	59.6	9.1e-19	1	55	46	100
DUF260 46 lkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +++lpe++r da+ss+vyeA+ar+rdPvyG+vg i++lqqq++ l+++la++++e XP_016455805.1 1 MQELPEHKRGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDMLRTQLAMAQAE 55 6899**********************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	1.2E-16	1	53	IPR004883	Lateral organ boundaries, LOB
PROSITE profile	PS50891	11.676	1	56	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 111 aa Download sequence Send to blast
MQELPEHKRG DAVSSMVYEA NARVRDPVYG CVGAISSLQQ QIDMLRTQLA MAQAEVVHLR 60 LRQSAGITNS PINSGSPSSH IMGSHQPKGY FHMDLDVDQS NNSFNEPIWP C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	3e-18	1	70	56	125	LOB family transfactor Ramosa2.1
5ly0_B	3e-18	1	70	56	125	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016455805.1	3e-79	PREDICTED: LOB domain-containing protein 4-like
Swissprot	Q9SHE9	1e-28	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A1S3YUV2	6e-78	A0A1S3YUV2_TOBAC; LOB domain-containing protein 4-like
STRING	XP_009609750.1	2e-77	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	5e-31	LOB domain-containing protein 4