 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
XP_016455718.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
Family |
NAC |
Protein Properties |
Length: 390aa MW: 44430.1 Da PI: 7.2594 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_016455718.1 | genome | NCBI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 169 | 1.5e-52 | 14 | 141 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95
+ pGfrFhPtdeelv +yL++kv++k++++ e ik++diyk++PwdLpk ++ +ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+
XP_016455718.1 14 MLPGFRFHPTDEELVGFYLRRKVQHKPISI-ELIKQLDIYKYDPWDLPKLATVGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIYSS 107
579***************************.89***************8778899***************************************9 PP
NAM 96 .kgelvglkktLvfykgrapkgektdWvmheyrl 128
+++ +glkk+Lvfykgra kg ktdW+mhe+rl
XP_016455718.1 108 eGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 141
56677***************************98 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 390 aa
Download sequence Send
to blast |
MEERNEKEKM DEVMLPGFRF HPTDEELVGF YLRRKVQHKP ISIELIKQLD IYKYDPWDLP 60 KLATVGEKEW YFYCPRDRKY RNSARPNRVT GAGFWKATGT DRPIYSSEGS KCIGLKKSLV 120 FYKGRAAKGI KTDWMMHEFR LPSITDSTAP KRFLDKHIPP NDSWAICRIF KKANSNTHRA 180 LSHSWVSPTV PENTTSDFLT SSHFTNYSNE ISLINKTSSP IQFSGCSIND LQNSSSNMTS 240 FSTLDLPLYK SLNSNYDPIT SYTFSSCTET SEILPLPKCI NMSNNNIDAS SLLLNMSSSI 300 FGDYSIPLPE NIEGGGVHDQ ETTLKEANHV NNMDHMEEQW RNVRSIGLLP LNNFPLNMAA 360 DAWKTNLLWD SSPCPSSEIA TSYSTNKCYT
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 3e-54 | 16 | 175 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-54 | 16 | 175 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-54 | 16 | 175 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-54 | 16 | 175 | 19 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-54 | 16 | 175 | 22 | 171 | NAC domain-containing protein 19 |
3swm_B | 4e-54 | 16 | 175 | 22 | 171 | NAC domain-containing protein 19 |
3swm_C | 4e-54 | 16 | 175 | 22 | 171 | NAC domain-containing protein 19 |
3swm_D | 4e-54 | 16 | 175 | 22 | 171 | NAC domain-containing protein 19 |
3swp_A | 4e-54 | 16 | 175 | 22 | 171 | NAC domain-containing protein 19 |
3swp_B | 4e-54 | 16 | 175 | 22 | 171 | NAC domain-containing protein 19 |
3swp_C | 4e-54 | 16 | 175 | 22 | 171 | NAC domain-containing protein 19 |
3swp_D | 4e-54 | 16 | 175 | 22 | 171 | NAC domain-containing protein 19 |
4dul_A | 3e-54 | 16 | 175 | 19 | 168 | NAC domain-containing protein 19 |
4dul_B | 3e-54 | 16 | 175 | 19 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help
Back to Top |
Source |
Description |
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | AC149288 | 1e-109 | AC149288.1 Solanum demissum chromosome 5 clone PGEC446J10, complete sequence. |
GenBank | EF514212 | 1e-109 | EF514212.1 Solanum tuberosum strain P6/210 contig R1, complete sequence. |