PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_016455528.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

C2H2

Protein Properties

Length: 257aa MW: 29144.3 Da PI: 8.7596

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016455528.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.4	0.00023	94	116	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C k F ++ L H++ H XP_016455528.1 94 FECQYCFKQFANSQALGGHQNAH 116 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	7.9E-6	92	121	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.0E-4	92	120	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.427	94	121	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	96	116	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 257 aa Download sequence Send to blast
MTKDVSSTFH SPSFNNGENY ESSSKSCVEN KRLKLFGFEL EPSPKIQKNS KEDQGDHESV 60 NSSSASTVSS GRDQEKLLPA SNSKPDHEEI MKKFECQYCF KQFANSQALG GHQNAHKKER 120 MRKKRLQLQA RKASLSCYLQ PFQNSNNNIN YQFYDPNSFF GNSDQFTVYD ESQISFSPYD 180 QDSQVSAGKW PFQQDSQVLA GKWPFQQDSC MFTLTHGEKS REKYSRPAAV MKPSALPNSA 240 SKKKCNSLDL QLGLSLH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009789685.1	0.0	PREDICTED: zinc finger protein 5-like
Refseq	XP_016455528.1	0.0	PREDICTED: zinc finger protein 5-like
TrEMBL	A0A1S3YTQ9	0.0	A0A1S3YTQ9_TOBAC; zinc finger protein 5-like
TrEMBL	A0A1U7XT84	0.0	A0A1U7XT84_NICSY; zinc finger protein 5-like
STRING	XP_009789685.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5136	21	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10480.1	3e-17	zinc finger protein 5