PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016455407.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | LBD | ||||||||
Protein Properties | Length: 123aa MW: 14012.2 Da PI: 8.4795 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.6 | 8.4e-38 | 5 | 105 | 1 | 101 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk lrr+C+++C++ pyfp ++p++f +vhk++Gasnv k+l++++e++r d+++sl+ eA +r++dPvyG+vg+++ l++++ +++ +la XP_016455407.1 5 RCAACKQLRRRCPSNCIFLPYFPPNNPQRFSYVHKVYGASNVGKMLQQVQEHQRADVADSLYLEAYCRIKDPVYGCVGIVTLLHEEIYHVQCQLA 99 6********************************************************************************************** PP DUF260 96 llkeel 101 ++++++ XP_016455407.1 100 KVQAQI 105 **9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.745 | 4 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.7E-38 | 5 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MTSSRCAACK QLRRRCPSNC IFLPYFPPNN PQRFSYVHKV YGASNVGKML QQVQEHQRAD 60 VADSLYLEAY CRIKDPVYGC VGIVTLLHEE IYHVQCQLAK VQAQIDLLKA QAQVQGELQQ 120 QVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-35 | 2 | 105 | 8 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-35 | 2 | 105 | 8 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 3e-53 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009798305.1 | 1e-86 | PREDICTED: LOB domain-containing protein 24-like | ||||
Refseq | XP_016455407.1 | 1e-86 | PREDICTED: LOB domain-containing protein 24-like | ||||
Swissprot | P59468 | 3e-44 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A1S3YTT8 | 3e-85 | A0A1S3YTT8_TOBAC; LOB domain-containing protein 24-like | ||||
TrEMBL | A0A1U7YHK4 | 3e-85 | A0A1U7YHK4_NICSY; LOB domain-containing protein 24-like | ||||
STRING | XP_009798305.1 | 4e-86 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5277 | 20 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 3e-46 | LOB domain-containing protein 24 |