PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016455326.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 329aa    MW: 37315.9 Da    PI: 6.9818
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016455326.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.28.1e-181462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l+ +++q+G+g +W t ++++g++R++k+c++rw++yl
   XP_016455326.1 14 RGPWSPEEDAKLKSYIQQHGTGgNWITLPQKVGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding39.41.4e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g +T+eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
   XP_016455326.1  69 GEFTEEEDNIICSLYLSIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      78*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.811962IPR017930Myb domain
SuperFamilySSF466892.33E-2711109IPR009057Homeodomain-like
SMARTSM007178.9E-131364IPR001005SANT/Myb domain
PfamPF002494.9E-161462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-251569IPR009057Homeodomain-like
CDDcd001671.08E-91662No hitNo description
PROSITE profilePS5129422.19563117IPR017930Myb domain
SMARTSM007171.1E-1167115IPR001005SANT/Myb domain
PfamPF002493.0E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-2470117IPR009057Homeodomain-like
CDDcd001674.85E-870111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKSYIQ QHGTGGNWIT LPQKVGLKRC GKSCRLRWLN  60
YLRPNIKHGE FTEEEDNIIC SLYLSIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGK  120
QRKDHRPRTG YLHNNKLDMM KENENFFAST PDIMNAYYSW PPQPLLFSTL IAPQNDLAES  180
SANFQYSPDQ VYFSQDQLCQ SSTNQLIPSS ASMNPLNINT CDSSVISSYY SSNINGVINS  240
FQEYNNYVPV GLNDVLNSTT SHSQQIDKSA LEMVNSSTIS TTSPDISTSW EELSPLIVYP  300
PSVCNSETQQ EISPYYVFEE SRYLGLLKQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-25141177108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016455326.10.0PREDICTED: transcription factor RAX3-like
TrEMBLA0A1S3YSW80.0A0A1S3YSW8_TOBAC; transcription factor RAX3-like
STRINGXP_009790050.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49690.14e-76myb domain protein 84