PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016455294.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARR-B
Protein Properties Length: 819aa    MW: 90653.2 Da    PI: 6.4101
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016455294.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like742e-23336389155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k++l+Wt  LH++F++a+++  G ++A Pktile+m+v+gLt+e+v+SHLQkYR+
  XP_016455294.1 336 KTKLVWTDALHNKFLQAIRET-GLDRAYPKTILEVMDVPGLTRENVASHLQKYRI 389
                     689*****************9.********************************6 PP
2Response_reg60.77.8e-2116425024109
                     EEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
    Response_reg  24 eevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                     ++v +++++++al +l+ ++  +D+i+ D+ mp+m+G+el + i++e  ++p+++++a + ++++le l++Ga  fl Kp++p++l++
  XP_016455294.1 164 NIVVTVKHARDALCILRVSNvsFDVIVSDVHMPDMNGFELQQVIAQEF-DIPVVFMSADDRDSMVLEGLERGAVFFLPKPISPDDLRD 250
                     57999***********999999**********************9999.9************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011026.241123256IPR001789Signal transduction response regulator, receiver domain
SMARTSM004484.4E-13129252IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521726.83E-22165255IPR011006CheY-like superfamily
PfamPF000727.4E-16165251IPR001789Signal transduction response regulator, receiver domain
Gene3DG3DSA:3.40.50.23001.2E-23166263No hitNo description
CDDcd001561.14E-19166256No hitNo description
PROSITE profilePS5129410.202333392IPR017930Myb domain
SuperFamilySSF466891.67E-17334393IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-24335393IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-21336389IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 819 aa     Download sequence    Send to blast
MAAIPVGVDS QIPSLDRNAP SDSLGTMIVG YSPYLPTFSE EAQKDKAIKD LQADLSKARE  60
EEVELDKQET IDRLAAEKET ILTNLLSADI QLRNIKQKSS AQVKRVKELE AQLAEAKAEV  120
ELSKILADKS ITVYGLMPRL LRWRHERRRI LPTPEHIGLP NMPNIVVTVK HARDALCILR  180
VSNVSFDVIV SDVHMPDMNG FELQQVIAQE FDIPVVFMSA DDRDSMVLEG LERGAVFFLP  240
KPISPDDLRD IWQYAALAKK NKGKGKSVVI EEIQENNSSS KSSSGLPKSP HENVESSSSI  300
NVEKGNKEGK KEESKKKSAR KHKEAEKEDS SIPPKKTKLV WTDALHNKFL QAIRETGLDR  360
AYPKTILEVM DVPGLTRENV ASHLQKYRIF LRKVTEESFR VQAADTNLAN TATQSTFGSK  420
GLSTTSQLSQ ENSGSQQLFF KNNSLAETSI RGSSSLSNRC ATPAITLPGY GKAKLVLDKG  480
DSSKIKSSNA NQLSTAEAAK NQTKSLVHED ISTQLLNAAI SANQLITRNL NSLHNSYTAE  540
ERHESNQSLV QRDSFLIGFE RDKEFASMLT SYLNQGANRM QLTRLPNNVE TGGRSGTVLD  600
QDWSSYINQG ATRMQLTRLQ KYVETGEGSG TIPDQDCEGE KQSAALWSSY LNQGANNVQL  660
TRFPNNFETG RGSGTKSGQD CEGEKQSVAM WSSFLNQGAN RVNQGEKQSE VVMWSSNLQL  720
TRFSNNFKTG GGSGTKLGQD YDVSTFDKNN ATSYSSGIGD LTSPFYSQLN VQPFHVKNSN  780
DQEETTFNFT DGNNQDQEAY YTLPLAYTPG ENYLYVPSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-17335395464ARR10-B
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016455294.10.0PREDICTED: uncharacterized protein LOC107779377
TrEMBLA0A1S3YST50.0A0A1S3YST5_TOBAC; uncharacterized protein LOC107779377
STRINGXP_009600306.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32902038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.13e-34response regulator 12