PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016454216.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 654aa MW: 74615 Da PI: 5.1483 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 68.8 | 1.3e-21 | 129 | 212 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a +++++ ++++w+v++++leHnH + XP_016454216.1 129 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTMKEAN-----SRRKETRTGCLAIIRLRLVESSRWRVDEVKLEHNHLF 212 69****************************************99888.....8999*******************************77 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.5E-19 | 129 | 212 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.5E-25 | 332 | 418 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.878 | 535 | 571 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.8E-6 | 546 | 573 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 4.7E-5 | 546 | 569 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 654 aa Download sequence Send to blast |
MLQMEEGLGT SEQLPEDEGS DNEVDSEEAF DITCNGDQVL NVEADELEAT TGQILEFESH 60 ETEKSCERVL DFESSDPKDN SHQLLEFHSN GLGGGDTTII DDHTGSSPGK FYPPPVVGME 120 FESYEDAYNY YNCYAKELGF AIRVKSSWTK RNSKEKRGAV LCCNCEGFKT MKEANSRRKE 180 TRTGCLAIIR LRLVESSRWR VDEVKLEHNH LFDPERVQNS KSHKKMDAGV KRKLEPAVDV 240 EVQTIKLYRT PAVETLGYGS SDERAFSGQV DGSTHLKLKE GDIQVIYNFF CRVQLTKPNF 300 FYIMDLNDEG YLKNVFWIDP RSRAAYAYFG DVVVVDTTCV SKKYDIPLLA FFGLNHHKQT 360 LLLGCGLLAD ESFETYVWLL RAWLSCMSGR PPQTIITDRC MALQNAISEV FPRAQHRLNL 420 SIILGSIFNT VGQVGESEVF REVLYNTVYN SLKVDEFEVA WEEMVHQFGF RGYGWLQSLY 480 EDRERWAPIY MKDTFFAGIS IDQPGIAQVH ANGPIITYIV TERGAQGDTG DARNFEVTYD 540 KMGVEVRCIC SCFNFKGYLC RHALSVLNYN GIEEIPNHYI LSRWRKDFKR LYAPELGSSN 600 IDVSNPVQRF DHLHKRAMQV ADEGMTSQDH YMVAWQAFKE SLNKVRLAAD KHVS |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009786842.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X2 | ||||
Refseq | XP_016454216.1 | 0.0 | PREDICTED: protein FAR1-RELATED SEQUENCE 8-like isoform X2 | ||||
Swissprot | Q9S793 | 1e-160 | FRS8_ARATH; Protein FAR1-RELATED SEQUENCE 8 | ||||
TrEMBL | A0A1S3YPR9 | 0.0 | A0A1S3YPR9_TOBAC; protein FAR1-RELATED SEQUENCE 8-like isoform X2 | ||||
TrEMBL | A0A1U7X409 | 0.0 | A0A1U7X409_NICSY; protein FAR1-RELATED SEQUENCE 8-like isoform X2 | ||||
STRING | XP_009786841.1 | 0.0 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G80010.1 | 1e-163 | FAR1-related sequence 8 |
Publications ? help Back to Top | |||
---|---|---|---|
|