PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016454183.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 206aa    MW: 23785 Da    PI: 8.7102
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016454183.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.10.00135274123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ++C+ C++ Fs+   L  H  +H
  XP_016454183.1 52 FECKTCNRQFSSFQALGGHRASH 74
                    89**********99999998887 PP
2zf-C2H210.70.0017100122123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++C++Cg  F     L  H+r+H
  XP_016454183.1 100 HECSICGLEFALGQALGGHMRRH 122
                     78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.16E-850122No hitNo description
PfamPF139121.5E-125176IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.2425279IPR007087Zinc finger, C2H2
SMARTSM003550.25274IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
PfamPF139122.8E-999123IPR007087Zinc finger, C2H2
PROSITE profilePS501578.974100122IPR007087Zinc finger, C2H2
SMARTSM003550.28100122IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MVFLPTKRER EEEDFHSIKT MANCLMLFSN QSNDYHFDNI MKYNNSTTNR VFECKTCNRQ  60
FSSFQALGGH RASHKKPRLN MRELNNLQLF QLPNIKPKTH ECSICGLEFA LGQALGGHMR  120
RHRVVITTTT TTTTTAEAQS QTSWTRLNEF SRHQALMNNE NLDQAPNRRV PVVKKLNGQR  180
VLCLDLNLTP LENDHLEFNL GADCFL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016454183.11e-154PREDICTED: zinc finger protein ZAT12-like
TrEMBLA0A1S3YPY41e-152A0A1S3YPY4_TOBAC; zinc finger protein ZAT12-like
STRINGXP_009604696.11e-144(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28710.15e-38C2H2 family protein