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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016453930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | CO-like | ||||||||
Protein Properties | Length: 394aa MW: 45011.5 Da PI: 6.2055 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 29.7 | 1.3e-09 | 17 | 60 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k+++++C ++ +lC++C ++ H+ H++v XP_016453930.1 17 ARACDSCIRKRARWYCAADDAFLCQSCDSSVHSAnplarrHERV 60 578*****************************667888888876 PP | |||||||
2 | CCT | 69.2 | 1.1e-23 | 339 | 382 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ XP_016453930.1 339 REARVLRYKEKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 382 9*****************************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 5.3E-11 | 15 | 62 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 11.049 | 15 | 62 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 6.6E-8 | 17 | 60 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.51E-10 | 18 | 62 | No hit | No description |
PROSITE profile | PS51017 | 16.003 | 339 | 381 | IPR010402 | CCT domain |
Pfam | PF06203 | 3.6E-18 | 339 | 381 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 394 aa Download sequence Send to blast |
MTSSEKKIAN VVGAKTARAC DSCIRKRARW YCAADDAFLC QSCDSSVHSA NPLARRHERV 60 RLKTSSLKSS DEFSNSVSVP SWHRGFTRKA RTPRNGKNSR KVKNPIQLVV PEILSDENSQ 120 DDNEEQLLYR VPILDPFVAD DAIGNEYSKD QMKNDFNDDH MSKFNGMLNI PSEMELAEFA 180 ADVESLLGRR LDDEESFNYM ELGLGFLEKH DDSMGCSLVD EKIKVENEGE MEVIIDRSSY 240 NQVDYSDTFD LKLDCDSPII TLEEDDKGDT KNNKILLNLD YGGVLNAWAD QRSPWTTGER 300 PEVDFNDCWP VCMGNCGKNH LYGDMGTMTG HGPTVDEGRE ARVLRYKEKR RTRLFSKKIR 360 YEVRKLNAEK RPRMKGRFVK RTNFAPTPFP SLNR |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 349 | 365 | RRTRLFSKKIRYEVRKL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016453930.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 16-like | ||||
Swissprot | Q8RWD0 | 6e-96 | COL16_ARATH; Zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | A0A1S3YPL3 | 0.0 | A0A1S3YPL3_TOBAC; zinc finger protein CONSTANS-LIKE 16-like | ||||
STRING | XP_009602362.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1539 | 24 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 3e-98 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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