PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016453648.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 472aa    MW: 51593.9 Da    PI: 6.5893
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016453648.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH185.3e-063613991154
                     HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      R +++ +++ +L++l+ +      +K + a++L +A+eYIk L
  XP_016453648.1 361 VRKEKMGDRITTLQQLVSPF-----GKTDTASVLSEAIEYIKFL 399
                     5778999**********998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.665350399IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.91E-7360403No hitNo description
SuperFamilySSF474594.84E-12360417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-9360422IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0048361405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MAEEFQLGRG NWWESSSSSS TSSSRNNKFE SGILSSTTMP SVSTALNSMA NNFGCWQTEF  60
EDIKAKSSLN PMSVSGSDNS SMVFPADSQK LHASESSVGG GVLSGGPNLQ IVGLGLSSQG  120
LDWNQPFFRG DKAGSGFRSI LEEGLSSDPN YQQEGSSQQD HHWTQKIYPG NSDGSSVNDY  180
NNKQMDRGIS LDHQPVFNAP NMSSNLDNAP YGSPSNMLQG LLISDSQQES NFTSARSLYY  240
PPYNPSNCDV NPAAADVMPT SSSSSSWSKF PKQQWPLPPP HGQSHFSGTP FWNATSAAME  300
DVRSGFLPSI HQQLPNPTVD MKPKHTAEVR NIRTIAKKSS SETSNKRPRN ETPSQMPAFK  360
VRKEKMGDRI TTLQQLVSPF GKTDTASVLS EAIEYIKFLH EQVNVLSTPY MKSGASMQQH  420
QQTSDKSNVN PEVAKQDLRG RGLCLVPVSS TFPVTHETTV DFWTPTFGGT FR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754462e-45HG975446.1 Solanum pennellii chromosome ch07, complete genome.
GenBankHG9755192e-45HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016453648.10.0PREDICTED: transcription factor bHLH112-like
TrEMBLA0A1S3YNG40.0A0A1S3YNG4_TOBAC; transcription factor bHLH112-like
STRINGXP_009617831.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8602486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20640.11e-63bHLH family protein