PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

XP_016453539.1

Organism

Nicotiana tabacum

Taxonomic ID

4097

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 192aa MW: 22016.5 Da PI: 8.0938

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_016453539.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.7	1.1e-14	90	141	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ ++++ + a+i+ A++++k+L+ XP_016453539.1 90 QRMTHIAVERNRRRQMNDYLAVLRSLMPPS---YAQRGDQASIVGGAINFVKELE 141 79**************************...*****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.62E-15	88	145	No hit	No description
SuperFamily	SSF47459	1.7E-18	89	165	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.815	89	140	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.3E-15	90	158	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	6.1E-12	90	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.7E-10	95	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MALETVVFQQ DPFIYSHEDF YNLGGFFHDY NWDSSHSSIA QSYNNNSSSP EVCTGFLPAE 60 YTPVETPVVS CRRKRRRTKC SKNKEEIENQ RMTHIAVERN RRRQMNDYLA VLRSLMPPSY 120 AQRGDQASIV GGAINFVKEL EQLLQFLEAH KQQVRNQLSP NNASQHPFSK FFTFPQYSTG 180 NNHPMAAASD GT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	76	RKRRR
2	72	77	RKRRRT
3	90	101	RMTHIAVERNRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009784356.1	1e-145	PREDICTED: transcription factor bHLH96-like
Swissprot	Q9C7T4	2e-42	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A1U7X3T8	1e-144	A0A1U7X3T8_NICSY; transcription factor bHLH96-like
STRING	XP_009784356.1	1e-145	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1996	24	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	9e-41	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]