PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016453059.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | bHLH | ||||||||
Protein Properties | Length: 252aa MW: 27857.2 Da PI: 7.1816 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.3 | 2.7e-13 | 187 | 232 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++Le+AveY+k Lq XP_016453059.1 187 SIAERVRRTRISDRIRKLQELVPNM----DKQTNTADMLEEAVEYVKFLQ 232 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.958 | 181 | 231 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-16 | 184 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 3.24E-12 | 185 | 236 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.6E-16 | 186 | 243 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.5E-10 | 187 | 232 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-13 | 187 | 237 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MQRGSGGAGG VGGGLSRYRS APATWLEALL ESDTENEVVL NPSSPILHSP NKPPPHPSTT 60 QQQLPELVKP ETRFTGDPGL FESGGSSNFL RQQSSPAEFL SHINSDGYFS SYGIPSSLSY 120 ISQPIKRPRE DDSESSPRKL SNHLKGEPSG QLHGSGGSLD AEMEKLMDDL VPCKVRAKRG 180 CATHPRSIAE RVRRTRISDR IRKLQELVPN MDKQTNTADM LEEAVEYVKF LQKQIQELME 240 HQKKCTCSEK DQ |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00181 | DAP | Transfer from AT1G35460 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 2e-50 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. | |||
GenBank | HG975518 | 2e-50 | HG975518.1 Solanum lycopersicum chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009788006.1 | 0.0 | PREDICTED: transcription factor bHLH80-like isoform X1 | ||||
Refseq | XP_016453059.1 | 0.0 | PREDICTED: transcription factor bHLH80-like | ||||
Swissprot | Q9C8P8 | 7e-68 | BH080_ARATH; Transcription factor bHLH80 | ||||
TrEMBL | A0A1S3YLE9 | 0.0 | A0A1S3YLE9_TOBAC; transcription factor bHLH80-like | ||||
TrEMBL | A0A1U7XED0 | 0.0 | A0A1U7XED0_NICSY; transcription factor bHLH80-like isoform X1 | ||||
STRING | XP_009788006.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11787 | 19 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G35460.1 | 1e-58 | bHLH family protein |