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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016453056.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WRKY | ||||||||
Protein Properties | Length: 347aa MW: 38976 Da PI: 6.7906 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.3 | 1.4e-32 | 189 | 246 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK+vk+s fpr+YYrCtsa+C+vkk+ver+ +dp++v++tYeg+H+h+ XP_016453056.1 189 EDGYRWRKYGQKTVKNSSFPRNYYRCTSASCNVKKRVERCFNDPSIVVTTYEGKHTHP 246 8********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 7.7E-35 | 173 | 248 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.01E-29 | 180 | 248 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.871 | 183 | 248 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-38 | 188 | 247 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-25 | 189 | 246 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 347 aa Download sequence Send to blast |
MESYKDITIK MEDPMSYFDN FPVISNSFTG LVSDYNFAVE GKNNSINSSL GFMELLGVQD 60 FCSASVFDVN SITTNLDQLL PKEEKYHIEP AVSISEEVKP SPAAESKKQL TVAAHGSSNN 120 ILNTPSTPNS SSISSETNEG HAQDAEGEVA EEQITKTKLQ LKAKKTVNQK KQREPRIAFM 180 TKSEVDFLED GYRWRKYGQK TVKNSSFPRN YYRCTSASCN VKKRVERCFN DPSIVVTTYE 240 GKHTHPSPMN MNMNMINMPR PTLFPTRVFP LPAPTATFPL QMPFHINQSA QPHFNDLTTP 300 LASNLDHAAL VAHGRRFCSA PPSVEIMRDQ GLLQDLMSSR VVEEDYR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-26 | 181 | 248 | 10 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-26 | 181 | 248 | 10 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00069 | PBM | Transfer from AT2G47260 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU056916 | 1e-95 | EU056916.1 Solanum tuberosum WRKY transcription factor 4 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016453056.1 | 0.0 | PREDICTED: probable WRKY transcription factor 23 | ||||
Swissprot | O22900 | 5e-49 | WRK23_ARATH; WRKY transcription factor 23 | ||||
TrEMBL | A0A1S3YLD2 | 0.0 | A0A1S3YLD2_TOBAC; probable WRKY transcription factor 23 | ||||
STRING | XP_009594706.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1309 | 24 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47260.1 | 2e-44 | WRKY DNA-binding protein 23 |
Publications ? help Back to Top | |||
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