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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016452911.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ZF-HD | ||||||||
Protein Properties | Length: 196aa MW: 22562.8 Da PI: 9.861 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 67.7 | 2e-21 | 12 | 61 | 4 | 57 |
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 +Y eC++N Aas+ g+a+DGC+Ef+p+ g +++l Ca C CHR+FHR+ + XP_016452911.1 12 QKYYECKHNYAASTMGYALDGCREFCPN----GAPESLICAPCLCHRSFHRKME 61 68*************************9....889****************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01566 | 3.3E-17 | 13 | 59 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.5E-17 | 13 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-9 | 13 | 69 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 18.685 | 14 | 60 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.84E-7 | 134 | 190 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-13 | 134 | 190 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MASNSKHFLV KQKYYECKHN YAASTMGYAL DGCREFCPNG APESLICAPC LCHRSFHRKM 60 EVELPILSNT HHRHGTSLVI VVPPTPTSQQ RSRIHPHQKY DENNNVAATS PPQGAETTEM 120 GGGEIEVVEQ MSIKRKRINS EQKERVKAFA EKIGWRRWTK YNKEVKTFCA EIGITPYFLK 180 NWIDNNRRRF GPKKTI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009799887.1 | 1e-148 | PREDICTED: zinc-finger homeodomain protein 5-like | ||||
Refseq | XP_016452911.1 | 1e-148 | PREDICTED: zinc-finger homeodomain protein 5-like | ||||
TrEMBL | A0A1S3YKY7 | 1e-147 | A0A1S3YKY7_TOBAC; zinc-finger homeodomain protein 5-like | ||||
TrEMBL | A0A1U7Y6X9 | 1e-147 | A0A1U7Y6X9_NICSY; zinc-finger homeodomain protein 5-like | ||||
STRING | XP_009799887.1 | 1e-147 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA10889 | 11 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 8e-25 | homeobox protein 31 |