PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016452902.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | SRS | ||||||||
Protein Properties | Length: 344aa MW: 36658.9 Da PI: 7.6375 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 216.7 | 5.1e-67 | 131 | 295 | 4 | 154 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstklssa 94 +a+CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerq ++++ + a+ +++++k++r +s++++++s+t++s++ XP_016452902.1 131 SSATCQDCGNQAKKDCPHRRCRTCCKSRGFDCTTHVKSTWVPAARRRERQLIGGTSTNVNVAAGsssqSTSSAKKPRLVNSQATTTASHTSTSNT 225 5689*********************************************98766655544332233447788899999999************** PP DUF702 95 eskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +++++++tss lP +v+++avf+cvrv+svddge+e+aYq++v igGhvfkG+LydqG+ee XP_016452902.1 226 TTPRSFDTSSshqdasfkasLPGQVRAPAVFKCVRVTSVDDGEDEFAYQAVVRIGGHVFKGFLYDQGIEE 295 ********999********************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 1.3E-62 | 132 | 294 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 8.7E-27 | 134 | 176 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 9.9E-29 | 246 | 293 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 344 aa Download sequence Send to blast |
MQINYGLSPE MGMFVVHPAS FHHHHHHHQN SHQENSINFD PINGSNISTS HATNTSLGVG 60 VIPLLTATPL TNMVSFDDQD LVSRNRGNDT EGGGFQFFSN QQPQNSYTKN SNVLGSGNGN 120 NNIVGSVSST SSATCQDCGN QAKKDCPHRR CRTCCKSRGF DCTTHVKSTW VPAARRRERQ 180 LIGGTSTNVN VAAGSSSQST SSAKKPRLVN SQATTTASHT STSNTTTPRS FDTSSSHQDA 240 SFKASLPGQV RAPAVFKCVR VTSVDDGEDE FAYQAVVRIG GHVFKGFLYD QGIEEGKDNN 300 NFPNLSDLHL GGSGNITNET SDLYAASTGG GGLLGGSNYG NQIN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016452902.1 | 0.0 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like | ||||
Refseq | XP_018627176.1 | 0.0 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 isoform X1 | ||||
Swissprot | Q94CK9 | 3e-79 | LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1 | ||||
TrEMBL | A0A1S3YLN0 | 0.0 | A0A1S3YLN0_TOBAC; protein LATERAL ROOT PRIMORDIUM 1-like | ||||
STRING | XP_009604000.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7655 | 23 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.4 | 1e-71 | Lateral root primordium (LRP) protein-related |
Publications ? help Back to Top | |||
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