PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_016452894.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 450aa MW: 50011.1 Da PI: 6.2066 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.7 | 1e-05 | 122 | 142 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cgk Fs+ L H+rtH XP_016452894.1 122 CKECGKEFSSTQALAGHLRTH 142 ********************9 PP | |||||||
2 | zf-C2H2 | 15.1 | 6.5e-05 | 153 | 175 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++Cgk F + L H+++H XP_016452894.1 153 HICEKCGKGFGSTRALYGHMKVH 175 68*******************99 PP | |||||||
3 | zf-C2H2 | 10.7 | 0.0016 | 379 | 401 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kCp+C k F++ +L H r H XP_016452894.1 379 HKCPICFKIFPSGQSLGGHKRAH 401 79**************9999988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.099 | 9 | 31 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 11 | 31 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.801 | 120 | 147 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.09 | 120 | 142 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 9.63E-11 | 121 | 175 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 122 | 142 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.1E-5 | 122 | 143 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 2.3E-7 | 122 | 144 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.1E-4 | 148 | 176 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.115 | 153 | 180 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0042 | 153 | 175 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 0.0039 | 153 | 175 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 155 | 175 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 7.97E-5 | 376 | 403 | No hit | No description |
PROSITE profile | PS50157 | 8.974 | 379 | 401 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.25 | 379 | 401 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.2E-9 | 379 | 402 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 381 | 401 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 450 aa Download sequence Send to blast |
MEETPEQKHK CRFCNLSCSS GRSLGGHMRV HLDLISAEKK QKIKAENKMG FAEEEEEADN 60 HFENLSISEQ SDSSMSQEKA NNISTNDVDD IDSIGYGLRE NPRKSWRVSE LKLSSLKTKN 120 LCKECGKEFS STQALAGHLR THSKKGTTTE KSHICEKCGK GFGSTRALYG HMKVHVKRSR 180 VDQESESSKQ SLSDFETVCP IRKKRSKIKY QIDANPSSSS AVSEVEEMEE AAKTLMMLSC 240 GVRDWDEYIS ISKPLKNENV ISANAFTGKN LSQAGCSDSG CVDGYEKKCE NEAINDEFSG 300 KLMMINTEIT RACYSTTMLG LDNDPSEDLA FLNSCSLKNA GVDFQVLNPE TTFVSDIPVE 360 LGTIEAMRTS PEPIKSKDHK CPICFKIFPS GQSLGGHKRA HYTGFSESKT KETMVKKLED 420 LADNHRSFDL NNPVNAVDGG EKDVVELNLW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016452894.1 | 0.0 | PREDICTED: zinc finger protein ZAT9-like | ||||
TrEMBL | A0A1S3YKY6 | 0.0 | A0A1S3YKY6_TOBAC; zinc finger protein ZAT9-like | ||||
STRING | XP_009603907.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6927 | 22 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G26610.1 | 1e-11 | C2H2-like zinc finger protein |