 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
XP_016452443.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
| Family |
AP2 |
| Protein Properties |
Length: 209aa MW: 22850.1 Da PI: 9.0259 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_016452443.1 | genome | NCBI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 40.2 | 8.5e-13 | 25 | 70 | 1 | 50 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaar 50
s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a
XP_016452443.1 25 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARAYDKAD 70
89********.7******...5...334336**********99*******996 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 209 aa
Download sequence Send
to blast |
MNNFSNEKFV HILRRQSNGF SRGSSKYRGV TLHKCGRWEA RMGQLLGKKY IYLGLFDSEI 60
EAARAYDKAD IKSSGKEAVI NFGLSTYEDV LSSEADIGGT TRNLDLNLGI SPSSYADNQH 120
GNTSQIGNFQ GQHGSNGLPE HRRQDQNTNG GSPTVPFFST AASSRFDNSA ITAPPSAAIH 180
QLHFGSGALP YRHSQSLTNM NLSHNYCTS
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AC244886 | 6e-62 | AC244886.2 Solanum lycopersicum strain Heinz 1706 chromosome 10 clone sle-19g7 map 10, complete sequence. |
| GenBank | HG975449 | 6e-62 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. |
| GenBank | HG975522 | 6e-62 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
