PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016452320.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 512aa    MW: 57545.8 Da    PI: 7.8518
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016452320.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.21e-09397444448
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      WT  E  +l+d+v+q+G g+W+ I +       +Rt+ ++k++w+++l
   XP_016452320.1 397 WTVSEVRKLIDGVAQYGVGRWSHIKKLYFsssAHRTPVDLKDKWRNLL 444
                      ***************************999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.975389448IPR017930Myb domain
SuperFamilySSF466891.79E-16391453IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-13391449IPR009057Homeodomain-like
SMARTSM007171.0E-11393446IPR001005SANT/Myb domain
CDDcd116603.33E-20397445No hitNo description
PfamPF002491.0E-7397444IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MNQNIAYRSG FASLGVWFDE SETRDVHASV SGVLCFDEKR VLKGMERKGV LYNIDSSIAA  60
KREEEINQEV LDLKRSHFEA GKIQAQNDLS APCEDYLLDI EFAESITNLD YGSSRGLLDP  120
ILESQIPLSS CDGTDTCGMP YSSGLVVQES QSQNAMFGLT NSELHDLSRD KCESQILVEY  180
NAVKFPTAFT PGDISNVDDV AGFFAEAAYS EKMNESVIDH SALTSKGFSF MSNAMQNEGQ  240
IVNCEIFDMH ESSAISPPVT SQTMNIDAPL TKKRLRKPTR RYIDESSDLN ARRSRKREEV  300
STCASASKDK FPRVRCQKKS RAESTEMELF PEESSCKAIQ VPFASLVNEE CDKRHASNAI  360
QVMKAHKEAT VVNPKDDATV PKKFDQDGVR RKHHRLWTVS EVRKLIDGVA QYGVGRWSHI  420
KKLYFSSSAH RTPVDLKDKW RNLLKACYLQ KQSKITEKGK HNLSWRPLPK SVLHRVNELA  480
NMHPYPRNGR CKSSVSPCSS SSPLHTNRSN IQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754480.0HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009605404.10.0PREDICTED: uncharacterized protein LOC104099973 isoform X1
RefseqXP_016452320.10.0PREDICTED: uncharacterized protein LOC107776885 isoform X1
TrEMBLA0A1S3YJN50.0A0A1S3YJN5_TOBAC; uncharacterized protein LOC107776885 isoform X1
STRINGXP_009605404.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91551723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.13e-26TRF-like 6