PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016452114.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family GeBP
Protein Properties Length: 404aa    MW: 44266.8 Da    PI: 5.0699
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016452114.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573110.89e-3587189197
          DUF573   1 klfqrlwseeDeivlLqGlidfkaktgk......spsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkif 89 
                     klfqrlw++eDei lLqG++d++ ++g       + + d++afy+++k++ +++++k+qlveK+rrLKkK+++ ++k+ sgke++f+++hd+ +f
  XP_016452114.1  87 KLFQRLWTDEDEIELLQGFLDYTIQRGLnnsstpQHHYDTTAFYDQIKSKFQLDFNKNQLVEKLRRLKKKYRTVMSKMGSGKEFVFKSAHDHATF 181
                     579************************97766444455********************************************************* PP

          DUF573  90 elskkiWg 97 
                     e+s+kiW 
  XP_016452114.1 182 EISRKIWT 189
                     *******6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.2E-3289188IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 404 aa     Download sequence    Send to blast
MIVKLHQPVY NDDNLDDDVD VDGDDDSTSS PPLAGEVTIA VSGVGVSPID SLALYPDLKR  60
RRLDDFTIPV ILPEKKPSAT FDDSQRKLFQ RLWTDEDEIE LLQGFLDYTI QRGLNNSSTP  120
QHHYDTTAFY DQIKSKFQLD FNKNQLVEKL RRLKKKYRTV MSKMGSGKEF VFKSAHDHAT  180
FEISRKIWTN LGSAVRGGSN GVAGAVVLYA PPEDGGLDDD DAHVNPNPYA NDLIDHSPKF  240
NLNSNPNGID IKTPRPRKRS PAASTEAVKV EQQPYQPSGG STTVPLAAAP VAEVAATATA  300
TATVAASIPS LIEETVRNCV SPIFKELLNS VANLNGPSRG FGFGGMGISP IPLGFGGGAM  360
SMEMTGDEKW RKQQMLELEV YSKRLELVQD QIKAQLEELR SMGS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15862KRRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016452114.10.0PREDICTED: uncharacterized protein LOC107776711
TrEMBLA0A1S3YIQ80.0A0A1S3YIQ8_TOBAC; uncharacterized protein LOC107776711
STRINGXP_009789456.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40522445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28040.15e-71DNA-binding storekeeper protein-related transcriptional regulator