PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016451671.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 567aa    MW: 66426.5 Da    PI: 6.6679
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016451671.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.93.1e-08711204391
            FAR1  43 eekkktekerrtra.etrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     ++k++  + r+t+  ++  +Cka++   ++++g w+v+k++++HnH+l p
  XP_016451671.1  71 SDKDSLARIRKTKFtTKSNNCKARVATVLDDSGCWRVSKVVHDHNHDLLP 120
                     44444455556555055679***************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.3E-676120IPR004330FAR1 DNA binding domain
PfamPF105511.5E-20241323IPR018289MULE transposase domain
PROSITE profilePS509669.742454490IPR007527Zinc finger, SWIM-type
SMARTSM005750.0011465492IPR006564Zinc finger, PMZ-type
PfamPF044341.5E-4466489IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
MTSDDSLLNE YKWVDDDDDE EPDGEYYGEA DDDEEQVLGN ELGLCDVDRE MENEFTKEDV  60
VVGPISGMRF SDKDSLARIR KTKFTTKSNN CKARVATVLD DSGCWRVSKV VHDHNHDLLP  120
SISRMMAGHR SVCDSLKRDL VAHDRSGIRP SKNIRLAEVQ RGGPQNLGCT PKDCRNFILK  180
SRNFEMQEGD AQSLLNFFRE MQVKDREFFY SIDVDNIGRL QNVVWVHSHC KGAYEQFHDA  240
ICFDTTYLVN RYNMPCSTFV GINHHRQSIL LGCSLMSHED IDSYKLVFKT WLEAIGNVHP  300
DAIITESIKR AIAEVMPNII HNITVEVFER KWTEYIARYN LHTRNWFNKL YSEKEKWIPV  360
YLDVYFWAGM LSTQRSEGMY AFFDGYITRQ STLKIFANQY ELAIRAKHEK ELEAEYRSKG  420
FQIVCESMFK WGEQAIQCYT HTVFKKNDGK PVDYNIEYTP IGDYFSCSCK WFESRGILCC  480
HILKILSNKK TDKIDERYIL TRWRSDIIRP HLNRFHQVGY INMIPEYKIY RSMLKYFDIA  540
CDIALGTSVK IQYVKHNLKK MVYDLQN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754462e-36HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016451671.10.0PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A1S3YHD50.0A0A1S3YHD5_TOBAC; protein FAR-RED IMPAIRED RESPONSE 1-like
STRINGXP_009587945.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1301943
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.15e-71FAR1 family protein