PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016451406.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ZF-HD
Protein Properties Length: 311aa    MW: 34794.7 Da    PI: 8.2441
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016451406.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer106.31.8e-33101158260
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreveee 60 
                     ++vrYkeClkNhAas+Ggh++DGCgEfmps geegt++ lkCaAC+CHRnFHR+e+e+e
  XP_016451406.1 101 SSVRYKECLKNHAASMGGHVLDGCGEFMPS-GEEGTPEYLKCAACDCHRNFHRKETEDE 158
                     579**************************9.999*********************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-21102156IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047701.9E-31103155IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.5E-31104154IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.313105154IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.607.9E-29242309IPR009057Homeodomain-like
SuperFamilySSF466891.58E-17242308IPR009057Homeodomain-like
TIGRFAMsTIGR015655.3E-26247304IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MEHTGQDKDM GMPNSIGFNS SHLNQQESTP FAAAKLPTAP IVSSLPDRTR NEQISHGNTI  60
FSPNQTLDHQ HNLTQNSDPD PTVIAVQLRQ QSTTSASDKN SSVRYKECLK NHAASMGGHV  120
LDGCGEFMPS GEEGTPEYLK CAACDCHRNF HRKETEDESQ TAGVHRNNSN SHRIHAQIPP  180
SLPAPPQQQH YHKYTHGYSR GPMPPVMMNF GGNSGVPAES SSEDLNMFNS NAGGQGVIQP  240
CTFSASKKRF RTKFTQQQKE KMQEFAEKLG WRIQKQDEQE VQQFCNEVGV KRQVFKVFMH  300
NCKQAIKRKQ T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-212483031873ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009603276.10.0PREDICTED: zinc-finger homeodomain protein 6-like
RefseqXP_016451406.10.0PREDICTED: zinc-finger homeodomain protein 6-like
SwissprotQ9ZPW76e-65ZHD6_ARATH; Zinc-finger homeodomain protein 6
TrEMBLA0A1S3YGM00.0A0A1S3YGM0_TOBAC; zinc-finger homeodomain protein 6-like
STRINGXP_009603276.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA51824128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.12e-67homeobox protein 24