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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_016451267.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 289aa MW: 32501.5 Da PI: 6.5438 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.6 | 1.5e-18 | 109 | 158 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 s+ykGVr++k +g+W+AeIrd + + +r++lg++ ta+eA +a++ r+++e XP_016451267.1 109 SKYKGVRQRK-WGKWAAEIRDpF-----KgRRVWLGTYSTAKEASRAYELKRLEFE 158 89*******9.**********55.....45**********************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.32E-24 | 109 | 166 | No hit | No description |
Pfam | PF00847 | 2.0E-12 | 109 | 159 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.33E-17 | 109 | 158 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 7.6E-22 | 110 | 159 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-20 | 110 | 174 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.112 | 110 | 168 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-9 | 111 | 122 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-9 | 133 | 149 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 289 aa Download sequence Send to blast |
MFEPERLFSS DLENLKRNIK EKADTDRKMR KIRIVCYDPD ATDSSDDEGI NYPKSKHFVR 60 EIKLQIGNSF STPKTSETEC SFQDSNNGEK KPKNKALAKP LIQPRQGLSK YKGVRQRKWG 120 KWAAEIRDPF KGRRVWLGTY STAKEASRAY ELKRLEFERM TKNSTNVSEK SSDDQNQTNT 180 NVASVSEDSA ESSASHTSHS LPSSVLELDS LTSASASTPI SGHNDNEKAS NVALEANVLE 240 QEVPELALME ETLSLAQIGE TMDLELALMI SVSIWMSLLS MILRTLRFV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-12 | 109 | 151 | 13 | 56 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016451267.1 | 0.0 | PREDICTED: ethylene-responsive transcription factor ERF118-like | ||||
TrEMBL | A0A1S3YH47 | 0.0 | A0A1S3YH47_TOBAC; ethylene-responsive transcription factor ERF118-like | ||||
STRING | XP_009767276.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2957 | 23 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68550.2 | 1e-23 | ERF family protein |