PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016451016.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 1024aa    MW: 114286 Da    PI: 6.5075
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016451016.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2130.00031933956223
                     EET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   2 kCp..dCgksFsrksnLkrHirtH 23 
                     +Cp   Cgk F+++ +  +H+r+H
  XP_016451016.1 933 RCPieGCGKKFTSHKYALVHQRVH 956
                     69999*****************99 PP
2zf-C2H211.30.00119921018123
                      EEET..TTTEEESSHHHHHHHHHH..T CS
         zf-C2H2    1 ykCp..dCgksFsrksnLkrHirt..H 23  
                      ykC+   Cg +F+  s++ rH r+  H
  XP_016451016.1  992 YKCKveGCGLTFRFVSDYSRHRRKtgH 1018
                      99*********************9777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035513909931IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.175932961IPR007087Zinc finger, C2H2
SuperFamilySSF576671.35E-5932969No hitNo description
SMARTSM003550.024932956IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.3E-5933960IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280934956IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.7E-9961986IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.531962991IPR007087Zinc finger, C2H2
SMARTSM003550.0028962986IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280964986IPR007087Zinc finger, C2H2
SuperFamilySSF576672.53E-109721014No hitNo description
Gene3DG3DSA:3.30.160.609.3E-119871015IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.7029921023IPR007087Zinc finger, C2H2
SMARTSM003550.289921018IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002809941018IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1024 aa     Download sequence    Send to blast
MAGWNFWELN SIHTCKDDTD LGFNCGEAAN FGTPQWLTVA KEAAVRRAAM NYLPMLSHQQ  60
LLYLLTMSFV SSVPRSLLPG VRTSRLRDRQ KEEKELLVKK AFLEDIEKEN DLVKVLLQKS  120
FSDNAVLWDV DILPSSGKEY ELHKHASVDA SRGNDQSDSI DSQDLLDQMS LYMDNYSDFY  180
VDDDVSCDFE IDSGTLPCIA CGILGFPFMT LVQPSKKAAE HLFPEDFQNK QDSGAVKHVE  240
SDCHSDLRGM IEDYNRVDRM ERNGGHYLNH DEVSLSSQPS ESAVTPHEGQ TSQSHNPSHT  300
DNAALTSKIE LQKEWDFCTS SVRPRIFCLE HAIQTEELLH TKGGANVLVI CHSDFQKIRS  360
HATIVAEEIG TSFKYNEISL ANASQGHLSL IDLAIVDEEQ DKCTEDWTLK LNINLRHCVK  420
VQKNCPLKKL KHALTLGGLF SDSTLSSESS SLKWQSRKVR SKRKSNNSTE SPAFANVQIE  480
KVLDSGSIVG RQNTRKGNIT IQYSRKKYKS KACSCAEVTR AFVDPFNGLT EEVLLTDAKT  540
FGSSTLIRDE NAGTASSGER FFAAPEGKPG LHHEHEMLLV NRDQNGNLLV SQEADLLVTS  600
SIMVEFNEAQ AEICTTEKFS MEEKTCHTNS NNRHAEHKTT APEISGDTEV AHVNTPACTT  660
IPVVRSTANN ENLREDQDMI ESGIRNKSAH PTEADFEIDH HGEADKAIMT RSPVPVNSSG  720
SCTDGPSRSC DEQIEDQSPE QSGSGSEASD NEISDNSVEQ KIQIDNADQG IAVSDHVTPV  780
EEASASAGSL KVTRETSSPK HSQSGDNISE RHKKESNDDT SPIVSRPIAK SGGKRRRELE  840
LLTYDGCSIG GFVKSPCEGL RPRARKNVLG SRVDTKEPLE DKPMGKKVKT SLPSSITHKD  900
KKEQRKGTHR CDLEGCRMSF QTKVELQLHK RNRCPIEGCG KKFTSHKYAL VHQRVHENDR  960
PLRCPWKGCT MTFKWAWART EHLRVHTGER PYKCKVEGCG LTFRFVSDYS RHRRKTGHYV  1020
EAAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A1e-53907102421138Lysine-specific demethylase REF6
6a58_A1e-53907102421138Lysine-specific demethylase REF6
6a59_A1e-53907102421138Lysine-specific demethylase REF6
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016451016.10.0PREDICTED: probable lysine-specific demethylase ELF6
RefseqXP_016451017.10.0PREDICTED: probable lysine-specific demethylase ELF6
TrEMBLA0A1S3YGF20.0A0A1S3YGF2_TOBAC; probable lysine-specific demethylase ELF6
STRINGXP_009589507.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48351721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04240.11e-65C2H2 family protein