PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016450789.1
Organism
Nicotiana tabacum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 834aa    MW: 92486 Da    PI: 4.8863
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016450789.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.23.9e-2099154156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t+ q++e+e+lF+++++p+ ++r +L++ lgL+ rqVk+WFqNrR+++k
  XP_016450789.1  99 KKRYHRHTARQIQEMEALFKECPHPDDKQRLKLSQDLGLKPRQVKFWFQNRRTQMK 154
                     688899***********************************************998 PP
2START154.49.2e-493045274206
                     HHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
           START   4 eeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                     ++ ++elvk+ +a++p+W +    + g+evl  +e s+               ++ea r s+vv+m++ +lv  lld + +W e ++    +a+t
  XP_016450789.1 304 LSSMDELVKMCQAADPLWIRTT--DSGKEVLNVEEYSRMfpwpvgikqnsneLRIEATRSSAVVIMNSITLVDALLDAN-KWIELFPsiisRAKT 395
                     6789*****************9..5566666665555556666679999999***************************.*************** PP

                     EEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE CS
           START  82 levissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwve 168
                     ++v++sg      g lqlm++e+qal+plvp R+ +f+Ry++q  ++g+w+ivd  +ds  ++   +++   ++++Sg++i++++ng+s+vtwve
  XP_016450789.1 396 IQVVTSGvsghasGSLQLMFMEMQALTPLVPtRECYFLRYCQQnVEEGTWAIVDFPLDSLHNNF-PAPFSYFKRRLSGCIIQDMPNGYSRVTWVE 489
                     *******************************************99***************9998.58888888********************** PP

                     -EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 169 hvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++++++ + +++++ v+sg+a+ga++w+  lqrqce+
  XP_016450789.1 490 QAEVEENPVNQIFNQYVSSGMAFGAQRWLGILQRQCER 527
                     ************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.3E-1889157IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-2093161IPR009057Homeodomain-like
PROSITE profilePS5007116.58496156IPR001356Homeobox domain
SMARTSM003895.8E-1997160IPR001356Homeobox domain
PfamPF000461.1E-1799154IPR001356Homeobox domain
CDDcd000865.71E-1899157No hitNo description
PROSITE patternPS000270131154IPR017970Homeobox, conserved site
PROSITE profilePS5084841.584292530IPR002913START domain
SuperFamilySSF559612.33E-32293529No hitNo description
CDDcd088752.52E-112296526No hitNo description
SMARTSM002341.9E-30301527IPR002913START domain
PfamPF018522.7E-41304527IPR002913START domain
SuperFamilySSF559611.09E-17553723No hitNo description
SuperFamilySSF559611.09E-17756795No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MFGDCQLFSS MGMGGSAVSS DSLYSSPIQN PNFNFMAMGG NNLPFNIFPP NIIPKEENGL  60
LKSKEEMDSG SGSEHIEGMS GNELETEQQQ QQQQQLGKKK RYHRHTARQI QEMEALFKEC  120
PHPDDKQRLK LSQDLGLKPR QVKFWFQNRR TQMKAQQDRA DNVILRAEND NLKNENYRLQ  180
AALRSIMCPS CGGPAMLGEM GYDEQQLRLE NARLKEEFER VCCLVSQYNG RGPMQGIGPT  240
TPLLPPPLEL DMSINFSRKF EEPMANCSAD MVPVPFMPEN NSQFSGGGPI ILEEEKSIAM  300
ELGLSSMDEL VKMCQAADPL WIRTTDSGKE VLNVEEYSRM FPWPVGIKQN SNELRIEATR  360
SSAVVIMNSI TLVDALLDAN KWIELFPSII SRAKTIQVVT SGVSGHASGS LQLMFMEMQA  420
LTPLVPTREC YFLRYCQQNV EEGTWAIVDF PLDSLHNNFP APFSYFKRRL SGCIIQDMPN  480
GYSRVTWVEQ AEVEENPVNQ IFNQYVSSGM AFGAQRWLGI LQRQCERLAS LMARNISDLG  540
VIPSPEARKS LMNLAQRMIK TFCMNISTSC GQSWTALSDS LEDTVRITTR KVTEPGQPNG  600
LILCAVSTTW IPYNHFQVFD LLRDERRRAQ LDVLSNGNSL HEVAHIANGS HPGNCISLLR  660
INVASNSSQS VELMLQESCT DDSGSLVVYT TVDVDAIQLA MNGEDPSCIP LLPLGFVVTP  720
VGQINNLDTN ISPSEANSGT QSAEKRNLSI QESGSGGCLL TVGLQVLAST IPTAKLNLSS  780
VTAINHHLCN TVQQITAALS AFYPEPAITV PSPQLQTQQQ QLEPKQADEI SSNS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016450789.10.0PREDICTED: homeobox-leucine zipper protein ROC3-like
RefseqXP_016450790.10.0PREDICTED: homeobox-leucine zipper protein ROC3-like
RefseqXP_016450791.10.0PREDICTED: homeobox-leucine zipper protein ROC3-like
SwissprotA2ZAI70.0ROC3_ORYSI; Homeobox-leucine zipper protein ROC3
TrEMBLA0A1S3YEX90.0A0A1S3YEX9_TOBAC; homeobox-leucine zipper protein ROC3-like
STRINGXP_009597691.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90202226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.10.0homeobox-7